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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
Osaka City University Graduate School of Medicine
Organism(s) covered:
Saccharomyces | Schizosaccharomyces pombe
Description:
National BioResource Project - Yeast is a database of the budding yeast (Saccharomyces cerevisiae) a...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Xenopus laevis
Description:
XDB is a database of Xenopus laevis EST sequences. The database contains over 250,000 ESTs that can ...
Database maintenance site:
Tokyo Institute of Technology Graduate School of Bioscience and Biotechnology
Organism(s) covered:
Vibrio parahaemolyticus
Description:
VPARA is a database of Vibrio parahaemolyticus genome sequence data. The database features BLAST and...
Database maintenance site:
The University of Tokyo Graduate School of Frontier Sciences
Organism(s) covered:
Oryzias latipes
Description:
This is a browser for the Medaka (Oryzias latipes) genome. The site allows users to perform BLAST se...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
Database maintenance site:
UniProt Consortium
Organism(s) covered:
All
Description:
This database contains information on amino acid sequences and their functions. It is composed of fo...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
This database contains sets of transcriptional sequences obtained from the same locus. It includes i...
Database maintenance site:
University California Santa Cruz
Organism(s) covered:
Mammalia | Vertebrata | Deuterostomia | Hexapoda | Nematoda | ...
Description:
UCSC Genome Browser is a database which contains the reference sequence and working draft assemblies...
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
TRSIG is a database of mRNA sequence elements that influence translation events. The database contai...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Aeropyrum pernix | Archaeoglobus fulgidus | Methanobacterium thermoautotrophicum | Methanococcus jannaschii | Pyrococcus abyssi | ...
Description:
This database compares a number of metabolic pathways in a group of seven single-celled microorganis...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This database of Arabidopsis transposon mutants can be searched by line ID or gene model ID to locat...
Database maintenance site:
Tel Aviv University
Organism(s) covered:
Homo sapiens | Mus musculus | Gallus gallus | Danio rerio | Drosophila melanogaster | ...
Description:
Transpogene is a database that focusses on how the transcriptome of 7 species are influenced by tran...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Escherichia coli
Description:
This database contains three working data tables displaying the effect of genes from a particular ca...
Database maintenance site:
The University of Tokyo Graduate School of Pharmaceutical Sciences
Organism(s) covered:
Homo sapiens | Rattus | Mus | Cercopithecidaes
Description:
TP-Search is an integrated database on drug transporters, which are thought to play an important rol...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Nicotiana tabacum
Description:
This database of tobacco cDNA clones contains 5' and 3' sequence information for each clone, generat...
Database maintenance site:
Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology
Organism(s) covered:
Homo sapiens
Description:
TMIG-2DPAGE Database is a database of aging-related proteome of human cells. This database contains ...
Database maintenance site:
Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University
Organism(s) covered:
Rattus norvegicus
Description:
NBRP-Rat is a database for collection, preservation and supply of rat strains with phenotypic and ge...
Database maintenance site:
Nara Institute of Science and Technology Graduate School of Biological Sciences
Organism(s) covered:
Mus musculus
Description:
NAISTrap is a database of gene-trapped ES cell lines generated by a gene trapping method termed UPAT...
Database maintenance site:
University of Reading
Organism(s) covered:
Description:
Species 2000 is a collection of all the species in the world (microbes, fungi, plants and animals).
...
Database maintenance site:
Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences
Organism(s) covered:
Description:
SPAD is a database of protein signaling cascades with pathway diagrams for a limited number of extra...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
dbSNP collects information on polymorphisms based on single and small-scale multi-base substitutions...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Homo sapiens | Pan troglodytes | Pan paniscus | Gorilla gorilla | Pongo pygmaeus | ...
Description:
Silver Project: Ape Genome Sequencing is a repository of ape nucleotide sequences maintained by Divi...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Bombyx mori
Description:
Silkworm Base is a database of silkworm resources including eggs, larvae, pupas, cocoons and cloned ...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Bombyx mori | Samia ricini | Bombyx mandarina
Description:
SilkBase is a database of expressed genes from Bombyx mori and the related species Samia cynthia ric...
Database maintenance site:
Stanford University
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and an...
Database maintenance site:
Forestry and Forest Products Research Institute
Organism(s) covered:
Cryptomeria japonica | Chamaecyparis obtusa
Description:
Sugi Genome Database is a database for genome of sugi (Cryptomeria japonica) and a Japanese conifer ...
Database maintenance site:
MRC (The Medical Research Council) Laboratory of Molecular Biology
Organism(s) covered:
Description:
SCOP2 is a database for organizing structurally characterized proteins according to their structural...
Database maintenance site:
The University of Tokyo Graduate School of Frontier Sciences
Organism(s) covered:
Saccharomyces cerevisiae
Description:
SCMD is a database of micrographs of budding yeast with thousands of images of mutant strains and re...
Database maintenance site:
The University of Tokyo Research Center for Advanced Science and Technology
Organism(s) covered:
Homo sapiens
Description:
SBM DB is comprehensive database of gene expression profiles. This database is constructed with thre...
Database maintenance site:
RIKEN Tsukuba Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
SASSC is a search tool for finding Arabidopsis mutant seed lines. The site consists of a search box ...
Database maintenance site:
University of Miyazaki Frontier Science Research Center
Organism(s) covered:
Eukaryota | Archaea | Bacteria
Description:
The original site was retired, and it is available in NBDC Life Science Database Archive.
Database maintenance site:
National Institute of Agrobiological Sciences
Organism(s) covered:
Oryza sativa
Description:
RMOS is a database of comprehensive information for Rice Microarray Project (April 1999 - March 2003...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This site contains information on the mitochondrial genome of rice, including sequences and physical...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This database contains Arabidopsis thaliana cDNA sequences that users can query to obtain full clone...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This database is a collection of two-dimensional electrophoretic gel spots obtained using various ti...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Rhizobiales | Frankia | Azoarcus | Rhodospirillales | Cupriavidus
Description:
RhizoBase is a database of rhizobia sequence resources for users to obtain genomic information and p...
Database maintenance site:
Medical College of Wisconsin/Bioinformatics Research Center
Organism(s) covered:
Rattus norvegicus
Description:
This is a comprehensive site for rat genome researches. In addition to information on rat genes, the...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Eukaryota | Bacteria | Archaea | Avsunviroidae | Pospiviroidae | ...
Description:
RefSeq is a database of standard reference genomic, transcript, and protein sequences. The database ...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mus musculus
Description:
READ is a database of mouse expression studies that allows users to explore gene expression patterns...
Database maintenance site:
Reactome team
Organism(s) covered:
Homo sapiens | Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | Canis lupus familiaris | ...
Description:
REACTOME is a database of human pathways for basic research, genome analysis, pathway modeling, syst...
Database maintenance site:
Michigan State University
Organism(s) covered:
Archaea | Bacteria
Description:
This database is a collection of rRNA sequences for fungai, bacteria and archaea. The site provides ...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Arabidopsis thaliana
Description:
The RARGE database was created to enhance the RIKEN Arabidopsis resource, which provides full-length...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This database contains highly accurate annotations on the rice genome provided by the rice annotatio...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
University of Toyama Institute of Natural Medicine
Organism(s) covered:
Description:
ETHMEDmmm is a database of collections which stored in The Museum of Materia Medica. It contains bot...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Macaca fascicularis
Description:
QFbase is a cDNA database of the crab-eating macaque (Macaca fascicularis). QFbase contains EST and ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This database contains bibliographic information from journal articles in the field of life science ...
Database maintenance site:
Yale University
Organism(s) covered:
Homo sapiens
Description:
Pseudogene.org is a comprehensive database of identified pseudogenes, utilities used to find pseudog...
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The data in the ProTherm database include thermodynamic parameters such as Gibbs free energy change,...
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The ProNIT database provides data on experimentally determined thermodynamic interactions between pr...