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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Cryptosporidium parvum
Description:
This is a database of the Cryptosporidium genome to browse the cDNA clones mapped to the genome, key...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Babesia
Description:
This is a database of the Babesia genomes, and allows for browsing of the cDNA clones mapped to the ...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Anopheles stephensi
Description:
This database of the Anopheles genome allows for browsing cDNA clones mapped to the genome, keyword ...
Database maintenance site:
Institute of Molecular and Cell Biology
Organism(s) covered:
Takifugu rubripes
Description:
Fugu Genome Project is a database of the pufferfish (Takifugu rubripes) genome. The database contain...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
fRNAdb is a sequence database hosting a large collection of non-coding RNA sequence data that were o...
Database maintenance site:
Waseda University School of Education
Organism(s) covered:
Synechocystis sp. PCC 6803
Description:
Fluorome is a database of cyanobacterial chlorophyll fluorescence information, with information on t...
Database maintenance site:
Molecular Profiling Research Center for Drug Discovery, AIST
Organism(s) covered:
Homo sapiens
Description:
FLJ is a sequence analysis database that is focused on mRNA variations of human genome and cDNA sequ...
Database maintenance site:
The University of Tokyo Graduate School of Science Department of Biophysics and Biochemistry
Organism(s) covered:
Description:
Flavonoid Database is a wiki-based database of flavonoids maintained by Arita Laboratory, the Univer...
Database maintenance site:
RIKEN Omics Science Center
Organism(s) covered:
Homo sapiens
Description:
FANTOM is a database about functional annotations of the Mammalian genomes. It contains experimental...
Database maintenance site:
Genome Exploration Research Group, RIKEN Genomic Sciences Center
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
FANTOM3 is a database of the mouse transcriptome, with comprehensive information on expressed mouse ...
Database maintenance site:
Keio University
Organism(s) covered:
Ciona intestinalis
Description:
FABA2 is a database of ascidian's three-dimensional (3D) and cross-sectional images in late developm...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Pan troglodytes | Macaca mulatta | ...
Description:
This is a database of corresponding genes (orthologs) linking humans with fourteen other vertebrates...
Database maintenance site:
INRAE (National Research Institute for Agriculture, Food and Environment)
Organism(s) covered:
Description:
ESTHER is a database of hydrolase family enzymes. The database contains information on hydrolases an...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
EST is a database of short single-read transcript sequences. The database contains thousands of sequ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Escherichia coli
Description:
eSOL is a database about the solubility of entire ensemble proteins of E.coli individually synthesiz...
Database maintenance site:
University of Pennsylvania
Organism(s) covered:
Vertebrata
Description:
EpoDB is a database about genes which relate to vertebrate red blood cells. It contains DNA sequence...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Eukaryota
Description:
EPD is a satabase of unique gene promoters. The database contains non-redundant sequences of promote...
Database maintenance site:
Ensembl Project
Organism(s) covered:
Dictyostelium discoideum | Plasmodium falciparum | Phytophthora infestans | Amoebozoa | Alveolata | ...
Description:
EnsemblProtists is a database of protist genomes. The database contains sequences from dozens of pro...
Database maintenance site:
Ensembl Project
Organism(s) covered:
Embryophyta
Description:
EnsemblPlants is a database of plant genomes. The database contains sequences from dozens of plants ...
Database maintenance site:
Ensembl Project
Organism(s) covered:
Diptera | Nematoda | Chelicerata | Hemiptera | Phthiraptera
Description:
EnsemblMetazoa is a database of metazoan genomes. The database contains sequences from dozens of met...
Database maintenance site:
Ensembl Project
Organism(s) covered:
Fungi
Description:
EnsemblFungi is a database of fungal genomes. The database contains sequences from dozens of fungal ...
Database maintenance site:
Ensembl Project
Organism(s) covered:
Eukaryota | Bacteria | Archaea | Viruses
Description:
EnsemblBacteria is a database of thousands of bacterial genomes. The database can be searched by gen...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
All
Description:
ENA is a database of data from global nucleotide sequencing projects. The database contains informat...
Database maintenance site:
Universite Claude Bernard Lyon 1
Organism(s) covered:
Bacteria | Archaea | Ascomycota
Description:
EMBGLib is a database of completely sequenced microbial genomes. The database contains genomes from ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens | Macaca mulatta | Mus musculus | Pan troglodytes | Canis lupus familiaris | ...
Description:
ECRbase is a database of regulatory conserved sequences. The database contains sections on conserved...
Database maintenance site:
Ewha Womans University
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Canis lupus familiaris | Gallus gallus | ...
Description:
ECgene is a database that provides annotation for alternative splicing of the genome.
Statistics on ...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
All
Description:
EBI is the website of the European Bioinformatics Institute. The site contains data from EBI experim...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Homo sapiens | Oryzias latipes | Bacteria
Description:
DTA is a repository of single-pass reads obtained from large-scale sequencing projects using capilla...
Database maintenance site:
University of Munster
Organism(s) covered:
Posidonia oceanica | Zostera marina
Description:
This is a database of EST sequences for two species of seaweed, the Mediterranean Posidonia and the ...
Database maintenance site:
Harvard University
Organism(s) covered:
Escherichia coli
Description:
This is a database for DNA-protein interactions in E.coli. It collects sequence-specific DNA-binding...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Pyrococcus
Description:
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Hexapoda
Description:
DJI is a database of Japanese insects names treating all the insect species or subspecies recorded f...
Database maintenance site:
NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Homo sapiens
Description:
Human cDNA Clones is a database of human cDNA clones for which a copy can be distributed by Biologic...
Database maintenance site:
FLI (Fritz Lipmann Institute)
Organism(s) covered:
Description:
This database is a collection of thermodynamic properties and structural characteristics of DNA and ...
Database maintenance site:
Northwestern University
Organism(s) covered:
Dictyostelium discoideum | Dictyostelium purpureum
Description:
This site contains information related to the ameboid protozoan Dictyostelium discoideum, including ...
Database maintenance site:
University of Tsukuba Graduate School of Life and Environmental Sciences
Organism(s) covered:
Dictyostelium discoideum
Description:
Dicty_cDB is a database of Dictyostelium discoideum sequencing data. The database contains informati...
Database maintenance site:
Tokyo Metropolitan University
Organism(s) covered:
Drosophila melanogaster
Description:
DGSP is a database of Drosophila insertion mutant lines. The database contains information on over 2...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
This is a database of sequence tagged sites those are sequence data for short genomic sequences used...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research) Kobe Institute
Organism(s) covered:
Mus musculus
Description:
DBSB is a listing of systems biology studies. Users can browse links to papers, figures, and data ta...
Database maintenance site:
Shanghai Center for Bioinformation Technology
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Gallus gallus | Fugu rubripes
Description:
DBH2H is a database of head-to-head oriented genes across multiple species, with information on all ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
This is a database for research on genotypes and phenotypes in humans, including genome-wide associa...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
This is one of the world's largest repository for EST with information on multiple species. Users ca...
Database maintenance site:
Kumamoto University Graduate School of Medical Sciences
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
This database contains a collection of expressed sequence tag (EST) sequences of human cytokines fro...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
This database indicates the interaction sites on proteins and shows how the structures of these site...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Aspergillus oryzae
Description:
This database aims to provide the fermentation industry (and namely that of sake production) with ap...
Database maintenance site:
Oxford University Press
Organism(s) covered:
Description:
The Journal of Biological Databases and Curation is a database that provides information on database...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Daphnia pulex
Description:
DaphniaBASE is a database of water flea sequence data with clone and contig mapping information and ...
Database maintenance site:
SickKids (The Hospital for Sick Children)
Organism(s) covered:
Homo sapiens
Description:
The Cystic Fibrosis Mutation Database (CFTR1) is a collection of mutations and sequence variants in ...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Bacteria | Cyanobacteria | Paulinella chromatophora
Description:
CyanoClust is a database of homologous proteins in cyanobacteria, plastids, and bacteria. The databa...