List of Database Records (records: 2187)
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Database maintenance site:
The University of Tokyo
Organism(s) covered:
Bombyx mori | Samia ricini | Bombyx mandarina
Description:
SilkBase is a database of expressed genes from Bombyx mori and the related species Samia cynthia ric...
Database maintenance site:
Stanford University
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and an...
Database maintenance site:
MRC (The Medical Research Council) Laboratory of Molecular Biology
Organism(s) covered:
Description:
SCOP2 is a database for organizing structurally characterized proteins according to their structural...
Database maintenance site:
The University of Tokyo Research Center for Advanced Science and Technology
Organism(s) covered:
Homo sapiens
Description:
SBM DB is comprehensive database of gene expression profiles. This database is constructed with thre...
Database maintenance site:
University of Miyazaki Frontier Science Research Center
Organism(s) covered:
Eukaryota | Archaea | Bacteria
Description:
The original site was retired, and it is available in NBDC Life Science Database Archive.
Database maintenance site:
National Institute of Agrobiological Sciences
Organism(s) covered:
Oryza sativa
Description:
RMOS is a database of comprehensive information for Rice Microarray Project (April 1999 - March 2003...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This site contains information on the mitochondrial genome of rice, including sequences and physical...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This database is a collection of two-dimensional electrophoretic gel spots obtained using various ti...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Rhizobiales | Frankia | Azoarcus | Rhodospirillales | Cupriavidus
Description:
RhizoBase is a database of rhizobia sequence resources for users to obtain genomic information and p...
Database maintenance site:
Medical College of Wisconsin/Bioinformatics Research Center
Organism(s) covered:
Rattus norvegicus
Description:
This is a comprehensive site for rat genome researches. In addition to information on rat genes, the...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Eukaryota | Bacteria | Archaea | Avsunviroidae | Pospiviroidae | ...
Description:
RefSeq is a database of standard reference genomic, transcript, and protein sequences. The database ...
Suspend
READ: Riken Expression Array Database
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mus musculus
Description:
READ is a database of mouse expression studies that allows users to explore gene expression patterns...
Database maintenance site:
Reactome team
Organism(s) covered:
Homo sapiens | Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | Canis lupus familiaris | ...
Description:
REACTOME is a database of human pathways for basic research, genome analysis, pathway modeling, syst...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Arabidopsis thaliana
Description:
The RARGE database was created to enhance the RIKEN Arabidopsis resource, which provides full-length...
Suspend
RAD: Rice Annotation Database
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
University of Toyama Institute of Natural Medicine
Organism(s) covered:
Description:
ETHMEDmmm is a database of collections which stored in The Museum of Materia Medica. It contains bot...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This database contains bibliographic information from journal articles in the field of life science ...
Database maintenance site:
Yale University
Organism(s) covered:
Homo sapiens
Description:
Pseudogene.org is a comprehensive database of identified pseudogenes, utilities used to find pseudog...
Suspend
ProTherm: Thermodynamic Database for Protein and Mutants
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The data in the ProTherm database include thermodynamic parameters such as Gibbs free energy change,...
Suspend
ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The ProNIT database provides data on experimentally determined thermodynamic interactions between pr...
Database maintenance site:
Waseda University
Organism(s) covered:
Description:
ProMode-Elastic is a database of normal mode analysis of PDB data using elastic network model in tor...
Database maintenance site:
Rhone-Alpes Bioinformatics Center
Organism(s) covered:
Description:
ProDom is an extensive database providing information on protein domain families.
It was created aut...
Database maintenance site:
Protein Research Foundation
Organism(s) covered:
Description:
PRF is a collection of the information related to amino acids, peptides and proteins and making data...
Database maintenance site:
Kyushu University Medical Institute of Bioregulation
Organism(s) covered:
Homo sapiens
Description:
Polymorphism of Microsatellite Markers is a database of genotypic information on microsatellite loci...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
PMD is a collections of literature data related to natural and artificial mutants for all kinds of p...
Database maintenance site:
James Hutton Institute
Organism(s) covered:
Arabidopsis thaliana | Chlamydomonas reinhardtii | Medicago truncatula | Solanum lycopersicum | Lycopersicon hirsutum f. glabratum | ...
Description:
Plant snoRNA Version 1.2 is a database that combines information of the Arabidopsis genome gathered ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Embryophyta
Description:
This database is a collection of nucleotide sequence motifs related to the regulations of gene expre...
Database maintenance site:
Georgetown University Medical Center
Organism(s) covered:
Description:
PIR is an integrated public bioinformatics resource that supports proteomic and genomic research. Us...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Physcomitrella patens
Description:
PHYSCObase is a database for sharing information on the moss Physcomitrella patens, which provides a...
Suspend
Pfam
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
Pfam Version 26.0 is a comprehensive database of protein families containing multiple sequence align...
Database maintenance site:
National Cardiovascular Center Research Institute
Organism(s) covered:
Mus musculus | Rattus norvegicus | Sus scrofa
Description:
PEPTIDOME is a database for endogenous peptides in cells, tissues and body. PEPTIDOME contains molec...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Sus scrofa
Description:
This database provides sequencing information for genome (contigs), cDNAs and cSNPs (SNPs on cDNAs) ...
Suspend
PEDANT3 database: a Protein Extraction, Description and Analysis Tool
Database maintenance site:
German Research Center for Environmental Health
Organism(s) covered:
Description:
PEDANT 3 is a database of information regarding the extraction, description and analysis of proteins...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Escherichia coli
Description:
PEC is a database for characterization of the E. coli genome and each gene's function. This database...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
This database was reorganized the data of PDB (Protein Data Bank) to suit sequence analysis by the I...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
All
Description:
PDBj in Japan maintains a single PDB archive of macromolecular structural data in conjunction with t...
Database maintenance site:
wwPDB consortium
Organism(s) covered:
All
Description:
This is an international public repository for three-dimensional structures and structure coordinate...
Suspend
National Bioresource Project - Pathogenic microbes
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Bacteria | Archaea
Description:
National Bioresource Project - 'Pathogenic microbes' collects reliable strains of pathogenic microor...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
OMIM is a database of human disease and genetic information and the online representation of Mendeli...
Database maintenance site:
University of Sydney
Organism(s) covered:
Description:
OMIA is a database of inherited disorders, other (single-locus) traits, and genes in animals which i...
Database maintenance site:
Niigata University Graduate School of Medical and Dental Sciences
Organism(s) covered:
Description:
All known operons from numerous species have been collected from literature and other public databas...
Database maintenance site:
Pole Bioinformatique Lyonnais
Organism(s) covered:
Bacillus subtilis
Description:
NRsub is a database that contains information covering the whole genome of Bacillus subtilis.
This s...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Triticum | Aegilops | Avena
Description:
KOMUGI is an integrated database of wheat managed by the National BioResource Project (NBRP)-Wheat. ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Oryza
Description:
Oryzabase is an integrated database that collects information and resources related to rice strains....
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Oryzias
Description:
NBRP Medaka is a database for offering resources of Medaka (Oryzias latipes) maintained by National ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Escherichia coli
Description:
NBRP E.coli Strain stocks mutants and clones of Escherichia coli to distribute to academic researche...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Chrysanthemum
Description:
NBRP Chrysanthemum provides resources of plants belonging to the genus Chrysanthemum and closely rel...
Database maintenance site:
NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Archaea | Bacteria | Fungi | Cyanobacteria | Glaucocystophyceae | ...
Description:
This is a site by which the culture catalogue of the Biological Resource Center of the National Inst...
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Mycoplasma penetrans
Description:
This is the database of the Mycoplasma penetrans genome project. Complete nucleotide sequence, prote...
Suspend
MRCD: Microbial Resources and Chemotaxomy Database
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description: