List of Database Records (records: 2186)
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Database maintenance site:
The University of Tokyo Graduate School of Frontier Sciences
Organism(s) covered:
Oryzias latipes
Description:
This is a browser for the Medaka (Oryzias latipes) genome. The site allows users to perform BLAST se...
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Probe
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
Database maintenance site:
UniProt Consortium
Organism(s) covered:
All
Description:
This database contains information on amino acid sequences and their functions. It is composed of fo...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
This database contains sets of transcriptional sequences obtained from the same locus. It includes i...
Database maintenance site:
University California Santa Cruz
Organism(s) covered:
Mammalia | Vertebrata | Deuterostomia | Hexapoda | Nematoda | ...
Description:
UCSC Genome Browser is a database which contains the reference sequence and working draft assemblies...
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
TRSIG is a database of mRNA sequence elements that influence translation events. The database contai...
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TraP: Transcription Product Database
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Aeropyrum pernix | Archaeoglobus fulgidus | Methanobacterium thermoautotrophicum | Methanococcus jannaschii | Pyrococcus abyssi | ...
Description:
This database compares a number of metabolic pathways in a group of seven single-celled microorganis...
Database maintenance site:
Tel Aviv University
Organism(s) covered:
Homo sapiens | Mus musculus | Gallus gallus | Danio rerio | Drosophila melanogaster | ...
Description:
Transpogene is a database that focusses on how the transcriptome of 7 species are influenced by tran...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Escherichia coli
Description:
This database contains three working data tables displaying the effect of genes from a particular ca...
Database maintenance site:
Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology
Organism(s) covered:
Homo sapiens
Description:
TMIG-2DPAGE Database is a database of aging-related proteome of human cells. This database contains ...
Database maintenance site:
Institute of Laboratory Animals, Graduate School of Medicine, Kyoto University
Organism(s) covered:
Rattus norvegicus
Description:
NBRP-Rat is a database for collection, preservation and supply of rat strains with phenotypic and ge...
Database maintenance site:
Nara Institute of Science and Technology Graduate School of Biological Sciences
Organism(s) covered:
Mus musculus
Description:
NAISTrap is a database of gene-trapped ES cell lines generated by a gene trapping method termed UPAT...
Database maintenance site:
University of Reading
Organism(s) covered:
Description:
Species 2000 is a collection of all the species in the world (microbes, fungi, plants and animals).
...
Database maintenance site:
Kyushu University Graduate School of Bioresource and Bioenvironmental Sciences
Organism(s) covered:
Description:
SPAD is a database of protein signaling cascades with pathway diagrams for a limited number of extra...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
dbSNP collects information on polymorphisms based on single and small-scale multi-base substitutions...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Homo sapiens | Pan troglodytes | Pan paniscus | Gorilla gorilla | Pongo pygmaeus | ...
Description:
Silver Project: Ape Genome Sequencing is a repository of ape nucleotide sequences maintained by Divi...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Bombyx mori
Description:
Silkworm Base is a database of silkworm resources including eggs, larvae, pupas, cocoons and cloned ...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Bombyx mori | Samia ricini | Bombyx mandarina
Description:
SilkBase is a database of expressed genes from Bombyx mori and the related species Samia cynthia ric...
Database maintenance site:
Stanford University
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is an integrated database for budding yeast Saccharomyces cerevisiae. It contains search and an...
Database maintenance site:
Forestry and Forest Products Research Institute
Organism(s) covered:
Cryptomeria japonica | Chamaecyparis obtusa
Description:
Sugi Genome Database is a database for genome of sugi (Cryptomeria japonica) and a Japanese conifer ...
Database maintenance site:
MRC (The Medical Research Council) Laboratory of Molecular Biology
Organism(s) covered:
Description:
SCOP2 is a database for organizing structurally characterized proteins according to their structural...
Database maintenance site:
The University of Tokyo Research Center for Advanced Science and Technology
Organism(s) covered:
Homo sapiens
Description:
SBM DB is comprehensive database of gene expression profiles. This database is constructed with thre...
Database maintenance site:
University of Miyazaki Frontier Science Research Center
Organism(s) covered:
Eukaryota | Archaea | Bacteria
Description:
The original site was retired, and it is available in NBDC Life Science Database Archive.
Database maintenance site:
National Institute of Agrobiological Sciences
Organism(s) covered:
Oryza sativa
Description:
RMOS is a database of comprehensive information for Rice Microarray Project (April 1999 - March 2003...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This site contains information on the mitochondrial genome of rice, including sequences and physical...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This database is a collection of two-dimensional electrophoretic gel spots obtained using various ti...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Rhizobiales | Frankia | Azoarcus | Rhodospirillales | Cupriavidus
Description:
RhizoBase is a database of rhizobia sequence resources for users to obtain genomic information and p...
Database maintenance site:
Medical College of Wisconsin/Bioinformatics Research Center
Organism(s) covered:
Rattus norvegicus
Description:
This is a comprehensive site for rat genome researches. In addition to information on rat genes, the...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Eukaryota | Bacteria | Archaea | Avsunviroidae | Pospiviroidae | ...
Description:
RefSeq is a database of standard reference genomic, transcript, and protein sequences. The database ...
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READ: Riken Expression Array Database
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mus musculus
Description:
READ is a database of mouse expression studies that allows users to explore gene expression patterns...
Database maintenance site:
Reactome team
Organism(s) covered:
Homo sapiens | Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | Canis lupus familiaris | ...
Description:
REACTOME is a database of human pathways for basic research, genome analysis, pathway modeling, syst...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Arabidopsis thaliana
Description:
The RARGE database was created to enhance the RIKEN Arabidopsis resource, which provides full-length...
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RAD: Rice Annotation Database
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
University of Toyama Institute of Natural Medicine
Organism(s) covered:
Description:
ETHMEDmmm is a database of collections which stored in The Museum of Materia Medica. It contains bot...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This database contains bibliographic information from journal articles in the field of life science ...
Database maintenance site:
Yale University
Organism(s) covered:
Homo sapiens
Description:
Pseudogene.org is a comprehensive database of identified pseudogenes, utilities used to find pseudog...
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ProTherm: Thermodynamic Database for Protein and Mutants
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The data in the ProTherm database include thermodynamic parameters such as Gibbs free energy change,...
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ProNIT: Thermodynamic Database for Protein-Nucleic Acid Interactions
Database maintenance site:
Kyushu Institute of Technology
Organism(s) covered:
Description:
The ProNIT database provides data on experimentally determined thermodynamic interactions between pr...
Database maintenance site:
Waseda University
Organism(s) covered:
Description:
ProMode-Elastic is a database of normal mode analysis of PDB data using elastic network model in tor...
Database maintenance site:
Rhone-Alpes Bioinformatics Center
Organism(s) covered:
Description:
ProDom is an extensive database providing information on protein domain families.
It was created aut...
Database maintenance site:
Protein Research Foundation
Organism(s) covered:
Description:
PRF is a collection of the information related to amino acids, peptides and proteins and making data...
Database maintenance site:
Kyushu University Medical Institute of Bioregulation
Organism(s) covered:
Homo sapiens
Description:
Polymorphism of Microsatellite Markers is a database of genotypic information on microsatellite loci...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
PMD is a collections of literature data related to natural and artificial mutants for all kinds of p...
Database maintenance site:
James Hutton Institute
Organism(s) covered:
Arabidopsis thaliana | Chlamydomonas reinhardtii | Medicago truncatula | Solanum lycopersicum | Lycopersicon hirsutum f. glabratum | ...
Description:
Plant snoRNA Version 1.2 is a database that combines information of the Arabidopsis genome gathered ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Embryophyta
Description:
This database is a collection of nucleotide sequence motifs related to the regulations of gene expre...
Database maintenance site:
Georgetown University Medical Center
Organism(s) covered:
Description:
PIR is an integrated public bioinformatics resource that supports proteomic and genomic research. Us...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Physcomitrella patens
Description:
PHYSCObase is a database for sharing information on the moss Physcomitrella patens, which provides a...
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Pfam
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
Pfam Version 26.0 is a comprehensive database of protein families containing multiple sequence align...
Database maintenance site:
National Cardiovascular Center Research Institute
Organism(s) covered:
Mus musculus | Rattus norvegicus | Sus scrofa
Description:
PEPTIDOME is a database for endogenous peptides in cells, tissues and body. PEPTIDOME contains molec...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Sus scrofa
Description:
This database provides sequencing information for genome (contigs), cDNAs and cSNPs (SNPs on cDNAs) ...