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DIP: Database of Interacting Proteins

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC00049
Database nameName of the database DIP
Alternative nameAlternative name of the database Database of Interacting Proteins
URLURL of the database http://dip.doe-mbi.ucla.edu/dip/Main.cgi
Database maintenance siteSite maintaining the database University of California
Country/RegionCountry or region name where the database maintenance site is located United States
Database descriptionDatabase descirption The DIP is a database of experimentally determined interactions between proteins. It contains protein pairs that are known to bind with each other at two amino acid chains. Each entry is curated, both, manually by expert curators and also automatically using computational approaches that utilize the the knowledge about the protein-protein interaction networks extracted from the most reliable, core subset of the DIP data. Each protein participating in a DIP interaction cross-references to, at least, one of the major protein databases - PIR, SWISSPROT and/or GENBANK. This database can be searched with node, BLAST, or text searches.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Saccharomyces cerevisiae (4932), Drosophila melanogaster (7227), Escherichia coli (562), Caenorhabditis elegans (6239), Homo sapiens (9606), Helicobacter pylori (210), Mus musculus (10090), Rattus norvegicus (10116), Bos taurus (9913), Arabidopsis thaliana (3702)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:14681454
DOI:-
PubMed ID:1175232
DOI:-
PubMed ID:11125102
DOI:-
PubMed ID:10592249
DOI:-
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data http://dip.doe-mbi.ucla.edu/dip/Download.cgi
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:24, http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:3, http://dip.doe-mbi.ucla.edu/dip/Guide.cgi?SM=0:4, http://psidev.sourceforge.net/molecular_interactions//xml/doc/user/
Link(s) to Terms of useLinks to terms of use of downloadable data http://dip.doe-mbi.ucla.edu/dip/Main.cgi
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/biodbcore-000558
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2013-06-17
Last update date of this recordLast update date of this English record 2022-05-29
Record license Creative Commons CC0 license