List of Database Records (records: 2187)
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Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Homo sapiens | Rattus norvegicus | Mus musculus | Macaca fuscata | Pan troglodytes
Description:
RIKEN BRC DNA BANK is a database of cloned DNA, vector and recombinant adenovirus resources maintain...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Cricetulus griseus | Mesocricetus auratus | ...
Description:
Cell Search System is a database of cultured cell lines derived from animal and human tissues mainta...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
Arabidopsis activation (T-DNA)-tagged lines is a database of T-DNA-tagged Arabidopsis plants maintai...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Arabidopsis thaliana
Description:
This database of Arabidopsis mutant lines contains several hundred mutant T1 lines with visible phen...
Closed
Rice Full-Length cDNA Encyclopedia DNABook
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Mus musculus
Description:
RIKEN ENU-based gene-driven mutagenesis is a collection of information on the ENU-based gene-driven ...
Closed
RED II: Rice Expression Database II
Database maintenance site:
National Institute of Agrobiological Sciences
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Viruses
Description:
RVD is a database of sequence and functional information about recombinant viruses generated, in par...
Closed
RARTF: RIKEN Arabidopsis Transcription Factor database
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
RARTF is a database of Arabidopsis transcription factors grouped into families listed on the front p...
Closed
RAPID: RIKEN Arabidopsis Phenome Information Database
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
RAPID is a database of Arabidopsis phenotypes resulting from transposition events. Users can search ...
Closed
PRIMe - Standard Spectrum Search: Platform for RIKEN Metabolomics - Standard Spectrum Search
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
Standard Spectrum Search is a database of metabolite NMR spectra. The database consists of dozens of...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
SpinAssign is a tool for annotating 2D 13C-HSQC NMR peaks. The site allows users to input peaks that...
Closed
Plant Repeat Databases
Database maintenance site:
Michigan State University
Organism(s) covered:
Embryophyta
Description:
Plant Repeat Databases is a collection of DNA sequence repeats found in plants. The database consist...
Closed
PEDB: Mammalian Promoter/Enhancer Database
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research) Kobe Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
PEDB is a database of mammalian promoters and enhancers. The database contains information regarding...
Closed
PDB-REPRDB: Representative protein chains from PDB
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
The site contains the same data as the Protein Data Bank (PDB). The information has however been reo...
Closed
PAZAR: A Public Database of Transcription Factor and Regulatory Sequence Annotation
Database maintenance site:
Centre for Molecular Medicine and Therapeutic
Organism(s) covered:
Description:
PAZAR is a database of regulatory sequence information, including information about transcription fa...
Closed
OmicScan (Integrating MEDLINE and Omics Database)
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Caenorhabditis elegans | Arabidopsis thaliana
Description:
Closed
OmicBrowse
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Rattus norvegicus | Mus musculus | Caenorhabditis elegans | Arabidopsis thaliana | ...
Description:
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
New Natural Compounds purified in RIKEN is a database of new compounds isolated from microorganisms ...
Closed
MusBanks: A portal to worldwide mutant databases
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Mus musculus
Description:
Database maintenance site:
Gunma University Institute for Molecular and Cellular Regulation Biosignal Genome Resource Center
Organism(s) covered:
Homo sapiens
Description:
MIAMI is a repository for epigenetics, particularly a method of DNA methylation analysis; MIAMI (Mic...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Solanum lycopersicum | Lotus japonicus | Glycine max | ...
Description:
This web-based tool, KaPPA-View4, represents -omics data on plant metabolic pathway maps that users ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Bombyx mori
Description:
This is a system that automatically predicts gene structures coding for proteins using existing silk...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Bos taurus | Felis catus | Gallus gallus | Pan troglodytes | Canis lupus familiaris | ...
Description:
The JCRB Cell Bank database organizes information for distribution of cell cultures. Information is ...
Database maintenance site:
National Human Genome Research Institute, National Institute of Health
Organism(s) covered:
Vertebrata
Description:
Histone Database is a resource for sequences and properties of histones and related proteins. The da...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This database is named HATODAS, meaning Heavy-ATOm DAtabase System. The purpose is to assist the res...
Closed
AOE: All Of gene Expression
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
This is an interface to search/view gene expression data in EBI ArrayExpress. The statistical value ...
Database maintenance site:
The University of Tokyo Graduate School of Arts and Sciences
Organism(s) covered:
Embryophyta | Bacteria | Metazoa | Fungi
Description:
Gclust is a database of homologous proteins across organisms. It contains protein homology informati...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
fRNAdb is a sequence database hosting a large collection of non-coding RNA sequence data that were o...
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Hexapoda
Description:
DJI is a database of Japanese insects names treating all the insect species or subspecies recorded f...
Database maintenance site:
Tokyo Metropolitan University
Organism(s) covered:
Drosophila melanogaster
Description:
DGSP is a database of Drosophila insertion mutant lines. The database contains information on over 2...
Database maintenance site:
RIKEN PSC (RIKEN Plant Science Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This is a database of Arabidopsis proteins targeted to chloroplasts initially identified by in silic...
Closed
NCC-CIR: Cancer Image Reference Database
Database maintenance site:
National Cancer Center
Organism(s) covered:
Homo sapiens
Description:
NCC-CIR is a database of cancer images for physicians. It contains medical images such as radiograph...
Database maintenance site:
University of Wisconsin System Board of Regents
Organism(s) covered:
All
Description:
BMRB is a database of biomolecular magnetic resonance data. Proteins, peptides, and nucleic acids, a...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This is a database of new biomarker candidates based on relationships between biomarker candidates a...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description:
ARSA is a database with a high-speed retrieval system of sequence and annotation data maintained by ...
Closed
Plant Heredity Resource Search
Database maintenance site:
Saga University
Organism(s) covered:
Rutaceae
Description:
Plant Heredity Resource Search is a database of plant species belonging to the mandarin orange famil...
Database maintenance site:
LANL (Los Alamos National Laboratory)
Organism(s) covered:
Chlamydophila pneumoniae | Chlamydia trachomatis | Haemophilus ducreyi | Mycoplasma genitalium | Neisseria gonorrhoeae | ...
Description:
This database contains molecular sequence information on papillomaviruses and related cellular prote...
Database maintenance site:
The Mass Spectrometry Society of Japan
Organism(s) covered:
Description:
MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was dev...
HIV Structural Database and Chem-BLAST
Database maintenance site:
National Institute of Standards and Technology
Organism(s) covered:
Human immunodeficiency virus | Homo sapiens
Description:
Chem-BLAST provides information of similar chemicals in terms of structure, using data of PDB and Pu...
Suspend
Flytrap
Database maintenance site:
The University of Edinburgh
Organism(s) covered:
Drosophila melanogaster
Description:
Flytrap is an HTML-based repository on gene expression. This database provides information on gene e...
Database maintenance site:
Keio University
Organism(s) covered:
Ciona intestinalis
Description:
FABA is a database of the developmental stages of Ciona intestinalis, with 3D images taken at critic...
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Apoidea
Description:
TABR is a reference database of tropical asian bees. A taxon is treated as one record in this databa...
Database maintenance site:
Kyoto Institute of Technology Drosophila Genetic Resource Center
Organism(s) covered:
Drosophila melanogaster
Description:
GETDB is a collection of information of Gal4 enhancer trap lines in D. melanogaster. The database co...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This database of Arabidopsis transposon mutants can be searched by line ID or gene model ID to locat...
Database maintenance site:
The University of Tokyo Graduate School of Pharmaceutical Sciences
Organism(s) covered:
Homo sapiens | Rattus | Mus | Cercopithecidaes
Description:
TP-Search is an integrated database on drug transporters, which are thought to play an important rol...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Nicotiana tabacum
Description:
This database of tobacco cDNA clones contains 5' and 3' sequence information for each clone, generat...
Database maintenance site:
Forestry and Forest Products Research Institute
Organism(s) covered:
Cryptomeria japonica | Chamaecyparis obtusa
Description:
Sugi Genome Database is a database for genome of sugi (Cryptomeria japonica) and a Japanese conifer ...
Database maintenance site:
The University of Tokyo Graduate School of Frontier Sciences
Organism(s) covered:
Saccharomyces cerevisiae
Description:
SCMD is a database of micrographs of budding yeast with thousands of images of mutant strains and re...
Database maintenance site:
RIKEN Tsukuba Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
SASSC is a search tool for finding Arabidopsis mutant seed lines. The site consists of a search box ...