List of Database Records (records: 2197)
Sort by:
Organism covered
Category
Operational Status
Region
Others
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
SpinAssign is a tool for annotating 2D 13C-HSQC NMR peaks. The site allows users to input peaks that...
Closed
Plant Repeat Databases
Database maintenance site:
Michigan State University
Organism(s) covered:
Embryophyta
Description:
Plant Repeat Databases is a collection of DNA sequence repeats found in plants. The database consist...
Closed
PEDB: Mammalian Promoter/Enhancer Database
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research) Kobe Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
PEDB is a database of mammalian promoters and enhancers. The database contains information regarding...
Closed
PDB-REPRDB: Representative protein chains from PDB
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
The site contains the same data as the Protein Data Bank (PDB). The information has however been reo...
Closed
PAZAR: A Public Database of Transcription Factor and Regulatory Sequence Annotation
Database maintenance site:
Centre for Molecular Medicine and Therapeutic
Organism(s) covered:
Description:
PAZAR is a database of regulatory sequence information, including information about transcription fa...
Database maintenance site:
Memorial Sloan-Kettering Cancer Center, the University of Toronto
Organism(s) covered:
Eukaryota | Bacteria | Viruses
Description:
Pathguide is a database of biological pathways. The database contains information on hundreds of pat...
Closed
OmicScan (Integrating MEDLINE and Omics Database)
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Caenorhabditis elegans | Arabidopsis thaliana
Description:
Closed
OmicBrowse
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Rattus norvegicus | Mus musculus | Caenorhabditis elegans | Arabidopsis thaliana | ...
Description:
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Nocardia farcinica
Description:
This is the genome database for Nocardia species, which can cause nocardosis in humans. The database...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
New Natural Compounds purified in RIKEN is a database of new compounds isolated from microorganisms ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Mus musculus | Rattus norvegicus | Drosophila | Caenorhabditis elegans | Bombyx mori | ...
Description:
NBRP is a portal site of the National BioResource Project (NBRP), which aims to collect, preserve, a...
Closed
MusBanks: A portal to worldwide mutant databases
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Mus musculus
Description:
Database maintenance site:
Gunma University Institute for Molecular and Cellular Regulation Biosignal Genome Resource Center
Organism(s) covered:
Homo sapiens
Description:
MIAMI is a repository for epigenetics, particularly a method of DNA methylation analysis; MIAMI (Mic...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
This site is a portal providing access to a large number of integrated Life Science databases.
Its ...
Database maintenance site:
University of Wurzburg
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
L1Base is a database of mobile elements in the human genome. The database contains position and acti...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Solanum lycopersicum | Lotus japonicus | Glycine max | ...
Description:
This web-based tool, KaPPA-View4, represents -omics data on plant metabolic pathway maps that users ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Bombyx mori
Description:
This is a system that automatically predicts gene structures coding for proteins using existing silk...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Bombyx mori
Description:
This database contains both the genetic and physical map information for the silkworm genome. A vari...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Bos taurus | Felis catus | Gallus gallus | Pan troglodytes | Canis lupus familiaris | ...
Description:
The JCRB Cell Bank database organizes information for distribution of cell cultures. Information is ...
Database maintenance site:
University of London
Organism(s) covered:
Description:
IUBMB Nomenclature is a database of enzyme nomenclature standards. The site contains specific inform...
Database maintenance site:
Princeton University
Organism(s) covered:
Sterkiella histriomuscorum | Oxytricha fallax
Description:
IES MDS Database is a database which characterizes sequence dynamics in Spirotrichea. The database c...
Database maintenance site:
National Human Genome Research Institute, National Institute of Health
Organism(s) covered:
Vertebrata
Description:
Histone Database is a resource for sequences and properties of histones and related proteins. The da...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This database is named HATODAS, meaning Heavy-ATOm DAtabase System. The purpose is to assist the res...
Closed
AOE: All Of gene Expression
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
This is an interface to search/view gene expression data in EBI ArrayExpress. The statistical value ...
Database maintenance site:
The University of Tokyo Graduate School of Arts and Sciences
Organism(s) covered:
Embryophyta | Bacteria | Metazoa | Fungi
Description:
Gclust is a database of homologous proteins across organisms. It contains protein homology informati...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
fRNAdb is a sequence database hosting a large collection of non-coding RNA sequence data that were o...
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Hexapoda
Description:
DJI is a database of Japanese insects names treating all the insect species or subspecies recorded f...
Database maintenance site:
Tokyo Metropolitan University
Organism(s) covered:
Drosophila melanogaster
Description:
DGSP is a database of Drosophila insertion mutant lines. The database contains information on over 2...
Database maintenance site:
Oxford University Press
Organism(s) covered:
Description:
The Journal of Biological Databases and Curation is a database that provides information on database...
Database maintenance site:
RIKEN PSC (RIKEN Plant Science Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This is a database of Arabidopsis proteins targeted to chloroplasts initially identified by in silic...
Closed
NCC-CIR: Cancer Image Reference Database
Database maintenance site:
National Cancer Center
Organism(s) covered:
Homo sapiens
Description:
NCC-CIR is a database of cancer images for physicians. It contains medical images such as radiograph...
Database maintenance site:
University of Wisconsin System Board of Regents
Organism(s) covered:
All
Description:
BMRB is a database of biomolecular magnetic resonance data. Proteins, peptides, and nucleic acids, a...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This is a database of new biomarker candidates based on relationships between biomarker candidates a...
Closed
BCBC: Beta Cell Biology Consortium
Database maintenance site:
Beta Cell Biology Consortium
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The Beta Cell Biology Consortium was to advance understanding associated with the development and fu...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description:
ARSA is a database with a high-speed retrieval system of sequence and annotation data maintained by ...
Closed
TOEFbioinfo
Database maintenance site:
Hokkaido University The Hokkaido University Museum
Organism(s) covered:
Lepidoptera
Description:
This is a database of specimen of Lepidoptera in Tomakomai Experimental Forest (Forest Research Stat...
Closed
Plant Heredity Resource Search
Database maintenance site:
Saga University
Organism(s) covered:
Rutaceae
Description:
Plant Heredity Resource Search is a database of plant species belonging to the mandarin orange famil...
Database maintenance site:
LANL (Los Alamos National Laboratory)
Organism(s) covered:
Chlamydophila pneumoniae | Chlamydia trachomatis | Haemophilus ducreyi | Mycoplasma genitalium | Neisseria gonorrhoeae | ...
Description:
This database contains molecular sequence information on papillomaviruses and related cellular prote...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
SHIGEN is a portal site of bioresource information in Japan maintained by National Institute of gene...
Database maintenance site:
NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Homo sapiens
Description:
This site collects data of cancers, such as morbidity and survival rate, for over 30 types of cancer...
Database maintenance site:
The Council for SAM Research
Organism(s) covered:
Mus musculus
Description:
This site is about The Council for SAM Research. It supplies senescence-accelerated mouse (SAM) for ...
Database maintenance site:
Census of Marine Life
Organism(s) covered:
Description:
OBIS is a integrated database of marine biogeographic data from all over the world. It contains info...
Database maintenance site:
The Mass Spectrometry Society of Japan
Organism(s) covered:
Description:
MassBank is a high-resolution mass spectral database that involves the JST-BIRD project, and was dev...
Database maintenance site:
Natural History Museum
Organism(s) covered:
Lepidoptera
Description:
HOSTS is a database that provides information on the host plants for Lepidoptera, an order of insect...
HIV Structural Database and Chem-BLAST
Database maintenance site:
National Institute of Standards and Technology
Organism(s) covered:
Human immunodeficiency virus | Homo sapiens
Description:
Chem-BLAST provides information of similar chemicals in terms of structure, using data of PDB and Pu...
Suspend
Flytrap
Database maintenance site:
The University of Edinburgh
Organism(s) covered:
Drosophila melanogaster
Description:
Flytrap is an HTML-based repository on gene expression. This database provides information on gene e...
Database maintenance site:
FishBase Consortium
Organism(s) covered:
Description:
FishBase is a relational database containing information about fish around the world to cater to dif...
Database maintenance site:
Keio University
Organism(s) covered:
Ciona intestinalis
Description:
FABA is a database of the developmental stages of Ciona intestinalis, with 3D images taken at critic...
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Apoidea
Description:
TABR is a reference database of tropical asian bees. A taxon is treated as one record in this databa...
Database maintenance site:
Kyoto Institute of Technology Drosophila Genetic Resource Center
Organism(s) covered:
Drosophila melanogaster
Description:
GETDB is a collection of information of Gal4 enhancer trap lines in D. melanogaster. The database co...