Server Renewal Notice
Server update on March 19, 2025.
|
List of Database Records (records: 2170)
Sort by:
Organism covered
Category
Operational Status
Region
Others
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Description:
CSML is a resource for the annotation of biological pathways. The database focuses on a standardized...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Mus musculus
Description:
CREATE is a database of sequence information for long cDNA clones from humans and mice, selected spe...
Database maintenance site:
Under survey
Organism(s) covered:
Description:
COPE (Cytokines & Cells Online Pathfinder Encyclopedia) version 31.4 is a comprehensive database of ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This is a collection of muliple sequence alignment models for ancient domains and full-length protei...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
ConfC is a database of the structure of protein and how its conformation changes for various reasons...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Archaea | Bacteria | Eukaryota | Avsunviroidae | Pospiviroidae | ...
Description:
The EMBL Database is a repository of entirely sequenced genomes.
The database contains complete geno...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Plasmodium falciparum | Plasmodium yoelii | Plasmodium vivax | Plasmodium berghei | Toxoplasma gondii | ...
Description:
Comparasite is a database of cDNA sequence information for seven parasitic species. In addition to s...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Archaea | Bacteria | Proteobacteria
Description:
This database defines all orthologs of protein sequences coded by known genomes. The species name, p...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
This is an integrated database of libraries and clones. Information such as clone names, library inf...
Database maintenance site:
Under survey
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
CleanEx is a database of gene expression related information in humans and in mice.
Search options c...
Database maintenance site:
University of Tsukuba Shimoda Marine Research Center
Organism(s) covered:
Ciona intestinalis
Description:
NBRP Ciona Intestinalis collects, maintains and distributes wild type and transgenic lines of C. int...
Database maintenance site:
RIKEN PSC (RIKEN Plant Science Center)
Organism(s) covered:
Arabidopsis thaliana
Description:
This is a database of Arabidopsis proteins targeted to chloroplasts initially identified by in silic...
Database maintenance site:
Ewha Womans University
Organism(s) covered:
Homo sapiens
Description:
ChimerDB is a comprehensive database of fusion genes. ChimerDB 3.0 is composed of three modules of C...
Database maintenance site:
Stanford University
Organism(s) covered:
Candida albicans
Description:
This database is a genome database for Candida. It contains manually curated annotations on genes an...
Database maintenance site:
BrainTx platform committee
Organism(s) covered:
Mus musculus
Description:
BrainTx is a neuroinformatics database that contains gene expression information related to various ...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Manihot esculenta
Description:
Database maintenance site:
National Cancer Center
Organism(s) covered:
Homo sapiens
Description:
NCC-CIR is a database of cancer images for physicians. It contains medical images such as radiograph...
Database maintenance site:
Virginia Commonwealth University
Organism(s) covered:
Caenorhabditis elegans
Description:
Database maintenance site:
Broad Institute of Harvard and MIT
Organism(s) covered:
Homo sapiens
Description:
The Broad Institute is a research institute established in 2004 between the Whitehead Institute at M...
Database maintenance site:
National Hospital Organization Kyushu Cancer Center
Organism(s) covered:
Homo sapiens
Description:
Breast Tumor Image Database is an image database of breast tumors constructed by National Kyusyu Can...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This is a collection of books and documents in the biology and biomedical field that can be accessed...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Bombyx mori
Description:
This database contains information on silkworm mutant lines generated through the enhancer trap meth...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Bombyx mori
Description:
This database integrates genetic maps and molecular linkage map information on the silkworm genome. ...
Database maintenance site:
University of Wisconsin System Board of Regents
Organism(s) covered:
All
Description:
BMRB is a database of biomolecular magnetic resonance data. Proteins, peptides, and nucleic acids, a...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This database is a collection of metabolic and signaling pathways in organisms, as well as interacti...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This is a database of new biomarker candidates based on relationships between biomarker candidates a...
Database maintenance site:
Harvard University Department of Molecular and Cellular Biology
Organism(s) covered:
Description:
Database maintenance site:
North Dakota State University
Organism(s) covered:
Phaseolus | Vigna
Description:
This is a database for gene and genome information of beans.
Most of the pages are not accessible t...
Database maintenance site:
Beta Cell Biology Consortium
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The Beta Cell Biology Consortium was to advance understanding associated with the development and fu...
Database maintenance site:
Tohoku University, The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Glycine max | Zea mays | Solanum lycopersicum | ...
Description:
ATTED-II is a coexpression database for Arabidopsis and other plant species. It stores calculated co...
Database maintenance site:
University of Tsukuba Graduate School of Life and Environmental Sciences
Organism(s) covered:
Dictyostelium discoideum AX2
Description:
Atlas (ISH Data Base) is a database of spatial gene expression profiles about Dictyostelium discoide...
Database maintenance site:
KIHARA Institute for Biological Research : Plant Biotechnology Division
Organism(s) covered:
Arabidopsis thaliana
Description:
Atgenexpress is a database of Arabidopsis gene expression. The main tool available at this site is a...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Oryza sativa | ...
Description:
This is a database of alternative splice variants and their transcripts. The database is named ASTRA...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Mus musculus
Description:
ASSETs is a resource for alternate splicing information, containing data tables from a study of mous...
Database maintenance site:
National Research Institute of Brewing
Organism(s) covered:
Aspergillus oryzae RIB40
Description:
This is a genome sequence database for Aspergillus oryzae, determined using the RIB40 strain from th...
Database maintenance site:
Nagahama Institute of Bio-Science and Technology
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
AS-ALPS is a database of alternative splicing products. The database contains information on how spl...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description:
ARSA is a database with a high-speed retrieval system of sequence and annotation data maintained by ...
Database maintenance site:
University California Santa Cruz
Organism(s) covered:
Saccharomyces cerevisiae
Description:
Ares lab Yeast Intron Database is a database for information about the spliceosomal introns of the y...
Database maintenance site:
Helmholtz Zentrum Munchen
Organism(s) covered:
Arabidopsis thaliana
Description:
This database contains information on the complete sequenced genome of the Arabidopsis thaliana.
The...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
This is a database of Arabidopsis thaliana expressed sequences. The database contains consensus gene...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
Database maintenance site:
INRAE (National Research Institute for Agriculture, Food and Environment)
Organism(s) covered:
Acyrthosiphon
Description:
Aphidbase 2.1 is a database containing information collected in a study of the genomes of aphids.
An...
Database maintenance site:
Lady Davis Institute for Medical Research
Organism(s) covered:
Homo sapiens
Description:
Androgen Database is a repository that provides information about mutations of the Androgen Receptor...
Database maintenance site:
University of Texas Southwestern Medical Center
Organism(s) covered:
Description:
Analysis of CASP8 targets and predictions is a database about the analysis of CASP8 targets and pred...
Database maintenance site:
Poznan Supercomputing and Networking Center
Organism(s) covered:
Description:
AARS is a database of Aminoacyl-tRNA synthetases in a number of microbial organisms. This repository...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
Allie is a database and an online search service for abbreviations and long forms used in life scien...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Chlorophyta
Description:
Algae Resource Database is a database of micro and macro algae culture collections established by Na...
Database maintenance site:
Addgene
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Danio rerio | Drosophila melanogaster | ...
Description:
Addgene is a non-profit organization providing plasmids to researchers. It is a collaboration with s...
Database maintenance site:
Universite Libre de Bruxelles
Organism(s) covered:
Eukaryota | Bacteria | Viruses
Description:
ACLAME Version 4 is a database of the mobile genetic elements (MGEs) as found in the genomes of all ...
Database maintenance site:
Hosei University
Organism(s) covered:
Eukaryota | Bacteria | Viruses
Description:
A List of Biodiversity Websites in Japan is a portal site about catalog databases related to biodive...