List of Database Records (records: 2186)
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HINTdb: Homologous Interactions Database
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Homo sapiens | Saccharomyces cerevisiae | Drosophila melanogaster | Arabidopsis thaliana | Caenorhabditis elegans | ...
Description:
HINTdb contains protein-protein interactions experimentally determined by IntAct, BioGRID and HPRD. ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Hepatitis C virus | Hepatitis B virus | Hepatitis E virus
Description:
The Hepatitis Virus Database includes all HCV/HBV/HEV/HAV/HAD entries from the latest release of the...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
The Human Anatomical gene Expression Library, H-ANGEL database, is a resource with information on hu...
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GTOP (Rice version): Genomes to protein structures and functions
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
GTOP is a integrated database of information on structures and functions of proteins identified by v...
Database maintenance site:
Ritsumeikan University
Organism(s) covered:
Description:
Glyco epitopes are carbohydrate antigens involved in various physiological functions such as cell to...
Database maintenance site:
Kyoto University Graduate School of Pharmaceutical Sciences
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
GLIDA is a GPCR-Ligand Database. The superfamily of G-protein coupled receptors (GPCRs) is a large c...
Database maintenance site:
Gifu International Institute of Biotechnology
Organism(s) covered:
Homo sapiens
Description:
GiiB was a research and development core institute of biotechnology in Gifu prefecture, and it was c...
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GIB: Genome Information Broker
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Archaea | Bacteria | Plasmodium falciparum | Guillardia theta | Leishmania major strain Friedlin | ...
Description:
Database maintenance site:
Kyoto University Graduate School of Science
Organism(s) covered:
Ciona intestinalis
Description:
The Ghost database provides genomic DNA and cDNA resources for Ciona intestinalis. genes encoding tr...
Database maintenance site:
Universite de Rennes
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Saccharomyces cerevisiae | Arabidopsis thaliana | ...
Description:
GermOnline 4 is a unique microarray expression database across various species.
It focusses on gamet...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This is a public data repository of functional genomics data obtained through microarrays and sequen...
Database maintenance site:
Yamaguchi University Faculty of Science
Organism(s) covered:
Description:
GON is a software platform for biological pathway modeling and simulation. It is based on two archit...
Database maintenance site:
Kitasato University Kitasato Institute for Life Sciences
Organism(s) covered:
Streptomyces avermitilis
Description:
This is the complete genome sequence of the industrial microorganism Streptomyces avermitilis known ...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Escherichia coli str. K-12 substr. MG1655 | Escherichia coli str. K-12 substr. W3110
Description:
GenoBase is a database on the complete system involving the living conditions of Escherichia coli K-...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
GENIES is used to predict functional associations between genes. The system can be used in a simple ...
Database maintenance site:
Weizmann Institute of Science/Department of Biological
Organism(s) covered:
Homo sapiens
Description:
geneAnnot Version 2.2 is a database of probe-sets and genes and their relationship to each other.
Th...
Database maintenance site:
GO (Gene Ontology) Consortium
Organism(s) covered:
Description:
GO is a database which provides a controlled vocabulary of terms for describing gene product charact...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The gene database provides information on gene sequence, structure, location, and function for annot...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Schizosaccharomyces pombe | Saccharomyces cerevisiae | Caenorhabditis elegans | Drosophila melanogaster | Mus musculus | ...
Description:
This site contains a dictionary of gene names (GENA). The dictionary can be searched for a gene, fam...
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GeMDBJ: Genome Medicine Database of Japan
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Homo sapiens
Description:
The Genome Medicine Database of Japan (GeMDBJ) is an integrated database developed by the Study Grou...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
GDBS is the gene Diversity Data Base System. It provides genetic polymorphism information related to...
Database maintenance site:
GBIF Secretariat
Organism(s) covered:
All
Description:
GBIF (Global Biodiversity Information Facility) is a database of information on Biodiversity and its...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Toxoplasma gondii
Description:
This database features a genome browser for transcriptome analysis of Toxoplasma gondii, with origin...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Plasmodium falciparum | Plasmodium vivax | Plasmodium yoelii | Plasmodium berghei
Description:
FULL-malaria collects sequence and expression information on the major malaria strain Plasmodia falc...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Homo sapiens
Description:
This database of cDNA sequences allows users to download human sequences, with different compressed ...
Database maintenance site:
University of Munster
Organism(s) covered:
Drosophila melanogaster
Description:
FlyView is an image database of the development and genetics of Drosophila.
It specializes in the ex...
Database maintenance site:
Genetics Society of America
Organism(s) covered:
Drosophila
Description:
This database contains genetic information on Drosophila. It allows users to search using BLAST, Gen...
Database maintenance site:
Department of Biological Sciences, Chuo University
Organism(s) covered:
Homo sapiens | Rattus | Mus | Archaea | Bacteria | ...
Description:
RIKEN FAMSBASE is a genome-wide protein structure model database that contains a large number of pro...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
The EzCatDB database contains enzyme catalytic mechanisms.
Data in the Protein Data Bank (PDB) are a...
Database maintenance site:
Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description:
Extremobase is a database of genome sequences from various extremophiles. Complete genome sequences ...
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ECGB: Eukaryotic Comparative Genome Browser
Database maintenance site:
JST (Japan Science and Technology Agency)
Organism(s) covered:
Eukaryota
Description:
Database maintenance site:
Tokyo Institute of Technology Graduate School of Bioscience and Biotechnology
Organism(s) covered:
Escherichia coli O157:H7 str. Sakai
Description:
This database provides a comprehensive resource about the E. coli O157:H7 Sakai genome, including a ...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
eProtS is a dictionary about protein molecules that are particularly important for biology with imag...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This search engine combs for information from over 30 major databases at NCBI, including PubMed, nuc...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
The European Nucleotide Archive (ENA) is a database that contains information about the structure an...
Database maintenance site:
Kumamoto University Institute of Resource Development and Analysis
Organism(s) covered:
Mus musculus
Description:
EGTC is a mouse gene trap resource which allows users to find information on cell lines and mice wit...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
eF-site is a database of molecular surfaces and electrostatic potentials for structures in the PDB t...
Database maintenance site:
University of California
Organism(s) covered:
Saccharomyces cerevisiae | Drosophila melanogaster | Escherichia coli | Caenorhabditis elegans | Homo sapiens | ...
Description:
The DIP is a database of experimentally determined interactions between proteins. It contains protei...
Database maintenance site:
Japan Atomic Energy Agency
Organism(s) covered:
Deinococcus
Description:
The DeinoBase database annotates open reading frames within the Deinococcus radiodurans genome to he...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
All
Description:
DDBJ, which is organized by NIG (National Institute of genetics), is one of the three databanks that...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Homo sapiens | Mus musculus | Plasmodium falciparum | Cyanidioschyzon merolae | Rattus norvegicus | ...
Description:
DBTSS provides precise positional information for transcription start sites (TSSs) of eukaryotic mRN...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Ciona
Description:
DBTGR collects information on tunicate gene regulation, including experimental data, reported gene a...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Bacillus subtilis
Description:
The DBTBS database consists of experimentally validated data for Bacillus subtilis regulated genes a...
Database maintenance site:
Kyushu University Medical Institute of Bioregulation
Organism(s) covered:
Homo sapiens
Description:
dbQSNP is a database of SNPs to help users characterize regulatory mechanisms of genes with medical ...
Database maintenance site:
National Institute of Radiological Sciences
Organism(s) covered:
Description:
dbProP is a database for supporting research on protein polymophisms. It provides information on ami...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
DBGET is an integrated system to help users search across an assemblage of major biological database...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Caenorhabditis elegans
Description:
This database comprises 168 Caenorhabditis elegans genes compiled to help users identify phenotypes ...
Database maintenance site:
The Centre for Applied Genomics
Organism(s) covered:
Homo sapiens
Description:
Database of Genomic Variants is a repository that provides information about variations in structure...
Database maintenance site:
Kyushu University Medical Institute of Bioregulation
Organism(s) covered:
Homo sapiens
Description:
D-HaploDB is a database of genome-wide definitive haplotypes that allows users to view SNP alleles, ...