List of Database Records (records: 2186)
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Database maintenance site:
University of Miyazaki, Faculty of Agriculture
Organism(s) covered:
Lotus japonicus | Glycine max | Rhizobium
Description:
NBRP Legume Base is a database for offering research materials of two legume species; Lotus japonicu...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
This site contains information on full-length cDNA from rice, classified into approximately 28,000 g...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
The KEGG SSDB (Sequence Similarity DataBase) organizes amino acid sequence similarities among all pr...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
The KEGG PATHWAY database has manually drawn pathway maps that represent molecular interaction and r...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
The KEGG LIGAND database is a composite consisting of COMPOUND, GLYCAN, REACTION, RPAIR, RCLASS, and...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Synechocystis sp. PCC 6803 | Bacillus subtilis | Escherichia coli str. K-12 substr. W3110 | Nostoc sp. PCC 7120 | Homo sapiens
Description:
The KEGG EXPRESSION database provides microarray gene expression profile data for Synechocystis PCC6...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
The KEGG BRITE database contains functional hierarchies and binary relationships of biological entit...
Database maintenance site:
The institute of medical science, The University of Tokyo
Organism(s) covered:
Homo sapiens
Description:
JSNP is a database consisting of common gene variations found in the Japanese population. In 2002, i...
Database maintenance site:
Tokyo Metropolitan Geriatric Hospital and Institute of Gerontology
Organism(s) covered:
Homo sapiens
Description:
JG-SNP is a database for accurate medical information and SNPs associated with geriatric diseases. T...
Database maintenance site:
The University of Tokyo Institute of Molecular and Cellular Biosciences
Organism(s) covered:
Drosophilidae
Description:
Jfly consists of following 3 contents to support Drosophila researchers.
1. Jfly mailing list seivic...
Database maintenance site:
Georgetown University Medical Center
Organism(s) covered:
Description:
The iProClass database integrates protein information from a variety of sources. The database connec...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
InterPro is a database that analyses proteins functionally and classifies them into families as well...
Database maintenance site:
The University of Tokyo Graduate School of Medicine
Organism(s) covered:
Drosophila | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
INOH provides information on the molecular pathways in humans, mice, rats and other organisms. This ...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Homo sapiens
Description:
IMGT/HLA is a database that specializes in the human major histocompatibility complex and its sequen...
Database maintenance site:
CNRS (The National Centre for Scientific Research), Montpellier University, Montpellier
Organism(s) covered:
Description:
IMGT is a database that offers information on immunogenetics and immunoinformatics.
This repository ...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Homo sapiens
Description:
The HUGE database is published by the Kazusa DNA Research Institute based on the results of its Kazu...
Database maintenance site:
Institute of Bioinformatics
Organism(s) covered:
Homo sapiens
Description:
HPRD (Human Protein Reference Database) version 9 is a manually curated, fully GO compliant protein ...
Suspend
HOWDY-R: Human Organized Whole genome Database Powered by RDF
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Homo sapiens
Description:
HOWDY-R (Human Organized Whole genome Database Powered by RDF) is a database for retrieve human geno...
Suspend
HINTdb: Homologous Interactions Database
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Homo sapiens | Saccharomyces cerevisiae | Drosophila melanogaster | Arabidopsis thaliana | Caenorhabditis elegans | ...
Description:
HINTdb contains protein-protein interactions experimentally determined by IntAct, BioGRID and HPRD. ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Hepatitis C virus | Hepatitis B virus | Hepatitis E virus
Description:
The Hepatitis Virus Database includes all HCV/HBV/HEV/HAV/HAD entries from the latest release of the...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
H-InvDB is the H-Invitational Database, which integrates human DNA sequences and the proteins for wh...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
The Human Anatomical gene Expression Library, H-ANGEL database, is a resource with information on hu...
Suspend
GTOP (Rice version): Genomes to protein structures and functions
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
GTOP is a integrated database of information on structures and functions of proteins identified by v...
Database maintenance site:
Ritsumeikan University
Organism(s) covered:
Description:
Glyco epitopes are carbohydrate antigens involved in various physiological functions such as cell to...
Database maintenance site:
Kyoto University Graduate School of Pharmaceutical Sciences
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
GLIDA is a GPCR-Ligand Database. The superfamily of G-protein coupled receptors (GPCRs) is a large c...
Database maintenance site:
Gifu International Institute of Biotechnology
Organism(s) covered:
Homo sapiens
Description:
GiiB was a research and development core institute of biotechnology in Gifu prefecture, and it was c...
Suspend
GIB: Genome Information Broker
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Archaea | Bacteria | Plasmodium falciparum | Guillardia theta | Leishmania major strain Friedlin | ...
Description:
Database maintenance site:
Kyoto University Graduate School of Science
Organism(s) covered:
Ciona intestinalis
Description:
The Ghost database provides genomic DNA and cDNA resources for Ciona intestinalis. genes encoding tr...
Database maintenance site:
Universite de Rennes
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Saccharomyces cerevisiae | Arabidopsis thaliana | ...
Description:
GermOnline 4 is a unique microarray expression database across various species.
It focusses on gamet...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
This is a public data repository of functional genomics data obtained through microarrays and sequen...
Database maintenance site:
Yamaguchi University Faculty of Science
Organism(s) covered:
Description:
GON is a software platform for biological pathway modeling and simulation. It is based on two archit...
Database maintenance site:
Kitasato University Kitasato Institute for Life Sciences
Organism(s) covered:
Streptomyces avermitilis
Description:
This is the complete genome sequence of the industrial microorganism Streptomyces avermitilis known ...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Escherichia coli str. K-12 substr. MG1655 | Escherichia coli str. K-12 substr. W3110
Description:
GenoBase is a database on the complete system involving the living conditions of Escherichia coli K-...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
GENIES is used to predict functional associations between genes. The system can be used in a simple ...
Database maintenance site:
Weizmann Institute of Science/Department of Biological
Organism(s) covered:
Homo sapiens
Description:
geneAnnot Version 2.2 is a database of probe-sets and genes and their relationship to each other.
Th...
Database maintenance site:
GO (Gene Ontology) Consortium
Organism(s) covered:
Description:
GO is a database which provides a controlled vocabulary of terms for describing gene product charact...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The gene database provides information on gene sequence, structure, location, and function for annot...
Database maintenance site:
The University of Tokyo The Institute of Medical Science Human Genome Center
Organism(s) covered:
Schizosaccharomyces pombe | Saccharomyces cerevisiae | Caenorhabditis elegans | Drosophila melanogaster | Mus musculus | ...
Description:
This site contains a dictionary of gene names (GENA). The dictionary can be searched for a gene, fam...
Suspend
GeMDBJ: Genome Medicine Database of Japan
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Homo sapiens
Description:
The Genome Medicine Database of Japan (GeMDBJ) is an integrated database developed by the Study Grou...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
GDBS is the gene Diversity Data Base System. It provides genetic polymorphism information related to...
Database maintenance site:
GBIF Secretariat
Organism(s) covered:
All
Description:
GBIF (Global Biodiversity Information Facility) is a database of information on Biodiversity and its...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Toxoplasma gondii
Description:
This database features a genome browser for transcriptome analysis of Toxoplasma gondii, with origin...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Plasmodium falciparum | Plasmodium vivax | Plasmodium yoelii | Plasmodium berghei
Description:
FULL-malaria collects sequence and expression information on the major malaria strain Plasmodia falc...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Homo sapiens
Description:
This database of cDNA sequences allows users to download human sequences, with different compressed ...
Database maintenance site:
University of Munster
Organism(s) covered:
Drosophila melanogaster
Description:
FlyView is an image database of the development and genetics of Drosophila.
It specializes in the ex...
Database maintenance site:
Genetics Society of America
Organism(s) covered:
Drosophila
Description:
This database contains genetic information on Drosophila. It allows users to search using BLAST, Gen...
Database maintenance site:
Department of Biological Sciences, Chuo University
Organism(s) covered:
Homo sapiens | Rattus | Mus | Archaea | Bacteria | ...
Description:
RIKEN FAMSBASE is a genome-wide protein structure model database that contains a large number of pro...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
The EzCatDB database contains enzyme catalytic mechanisms.
Data in the Protein Data Bank (PDB) are a...
Database maintenance site:
Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description:
Extremobase is a database of genome sequences from various extremophiles. Complete genome sequences ...