Database Record
Inactive
HPRD: Human Protein Reference Database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00103 | ||||
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| Database nameName of the database | HPRD | ||||
| Alternative nameAlternative name of the database | Human Protein Reference Database | ||||
| URLURL of the database | http://www.hprd.org | ||||
| Database maintenance siteSite maintaining the database | Institute of Bioinformatics | ||||
| Country/RegionCountry or region name where the database maintenance site is located | India | ||||
| Database descriptionDatabase descirption | HPRD (Human Protein Reference Database) version 9 is a manually curated, fully GO compliant protein database. The repository contains 30,047 protein entries, 41,327 protein-protein interactions and 93,710 posttranslational modifications. There are 112,158 occurrences of protein expression, 22,490 of subcellular positioning and 470 domains are identified. All the information in HPRD, including features of proteins such as post-translational modifications, tissue expression, subcellular localization and protein-protein interactions, may be downloaded as XML and FLAT files. Permission is, however, necessary before this may be done. The database can be browsed by selecting a protein, domain, motif, PTM or localization class of interest from a list that is provided. A Blast search option is available by entering a nucleotide or protein sequence. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://www.hprd.org/download | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | http://www.hprd.org/download | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | http://www.hprd.org/download | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/biodbcore-000395 | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2013-06-17 | ||||
| Record license | Creative Commons CC0 license |