Database Record
KEGG SSDB Database: Sequence Similarity Database (Orthologs/paralogs, conserved gene clusters, and sequence motifs)
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00119 |
|---|---|
| Database nameName of the database | KEGG SSDB Database |
| Alternative nameAlternative name of the database | Sequence Similarity Database (Orthologs/paralogs, conserved gene clusters, and sequence motifs) |
| URLURL of the database | http://www.kegg.jp/kegg/ssdb/ |
| Database maintenance siteSite maintaining the database | Kyoto University Institute for Chemical Research Bioinformatics Center (Link to J-Global) |
| Country/RegionCountry or region name where the database maintenance site is located | Japan |
| Database descriptionDatabase descirption | The KEGG SSDB (Sequence Similarity DataBase) organizes amino acid sequence similarities among all protein-coding genes in complete genomes computationally generated from the geneS database in KEGG. Using the SSEARCH program, all possible pairwise genomes are compared and gene pairs with a Smith-Waterman similarity score of 100 or more are entered into SSDB together with the information on best hits and bidirectional best hits (best-best hits). SSDB is a weighted and directed graph that can be used to search orthologs and paralogs, and conserved gene clusters, taking positional correlations on the chromosome into consideration. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | ― |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | English |
| Operational statusOperational status for the database | Active |
| Link(s) to Downloadable dataLinks to downloadable data | ― |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― |
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― |
| Link(s) to "How to use" | ― |
| Contact information of database | ― |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | ― |
| Link to MEDALS Database listLink to MEDALS Database list | ― |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | ― |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | Integbio Database Catalog |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 |
| Last update date of this recordLast update date of this English record | 2018-12-16 |
| Record license | Creative Commons CC0 license |