List of Database Records (records: 2186)
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Closed
Clinical Knowledgebase: JAX-CKB
Database maintenance site:
The Jackson Laboratory
Organism(s) covered:
Homo sapiens
Description:
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of...
Database maintenance site:
IRCCS (Istituto di Ricovero e Cura a Carattere Scientifico)
Organism(s) covered:
Homo sapiens
Description:
CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of huma...
Database maintenance site:
National Genomics Data Center, China National Center for Bioinformation / Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:
Canis lupus
Description:
iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids that provid...
Database maintenance site:
Organism(s) covered:
Scleractinia
Description:
The Coral Trait Database is a growing compilation of scleractinian coral life history trait, phyloge...
Inactive
RNA Binding Protein Variant Database: RBP-Var
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins...
Closed
Deciphering the Mechanisms of Developmental Disorders: DMDD
Database maintenance site:
Francis Crick Institute
Organism(s) covered:
Mus musculus
Description:
Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines ma...
Database maintenance site:
North Carolina State University
Organism(s) covered:
Bos taurus | Caenorhabditis elegans | Canis lupus | Danio rerio | Eumetazoa | ...
Description:
The Comparative Toxicogenomics Database (CTD) advances understanding of the effects of environmental...
Database maintenance site:
IBMP (Plant Molecular Biology Institute)
Organism(s) covered:
Arabidopsis thaliana | Brachypodium distachyon | Chlamydomonas reinhardtii | Cyanophora paradoxa | Ectocarpus siliculosus | ...
Description:
The PlantRNA database compiles tRNA gene sequences retrieved from fully annotated plant nuclear, pla...
Inactive
Whole-Cell Knowledge Base: WholeCellKB
Database maintenance site:
Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Mycoplasma genitalium
Description:
WholeCellKB is a collection of open-access model organism databases specifically designed to enable ...
Database maintenance site:
Department of Biochemistry, University of Cambridge, NCBS (National Center for Biological Sciences), Department of Crystallography, Birkbeck College, University of London
Organism(s) covered:
All
Description:
PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic versi...
Database maintenance site:
CALIPHO (Computer and Laboratory Investigation of Proteins of Human Origin Group, Swiss Institute of Bioinformatics), SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Homo sapiens
Description:
neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integrat...
Database maintenance site:
Theoretical Biology and Biophysics, T-10, Los Alamos National Laboratory
Organism(s) covered:
Nairovirus | Viruses | Zika virus
Description:
The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Databa...
Database maintenance site:
Organism(s) covered:
Metazoa | Placozoa
Description:
MitoZoa is a specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA e...
Inactive
zfishbook
Database maintenance site:
Mayo Clinic
Organism(s) covered:
Danio rerio
Description:
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides...
Database maintenance site:
BIOTEC (The Biotechnology Center, Technische Universitat Dresden), EMBO (European Molecular Biology Organization), University of Copenhagen
Organism(s) covered:
All
Description:
STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemical...
Database maintenance site:
Yale University, Yale University School of Medicine
Organism(s) covered:
All
Description:
ModelDB provides an accessible location for storing and efficiently retrieving computational neurosc...
Database maintenance site:
Organism(s) covered:
All
Description:
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic sear...
Database maintenance site:
Cell Networks, University of Heidelberg
Organism(s) covered:
All
Description:
Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structur...
Database maintenance site:
Ming Chen's Lab, Zhejiang University
Organism(s) covered:
Viridiplantae
Description:
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes ...
Inactive
GENI-ACT
Database maintenance site:
MGAN (Microbial Genome Annotation Network)
Organism(s) covered:
Bacteria
Description:
GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial geno...
Database maintenance site:
ELIXIR, Wellcome Genome Campus, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The Identifiers.org Central Registry provides the necessary information for the generation and resol...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
mirEX2 is a comprehensive platform for comparative analysis of primary microRNA expression data. RT–...
Inactive
MIPModDB: A Central Resource for the Superfamily of Major Intrinsic Proteins
Database maintenance site:
IIT Kanpur (Indian Institute of Technology Kanpur)
Organism(s) covered:
All
Description:
This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) fami...
Database maintenance site:
ACTREC (Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre)
Organism(s) covered:
Homo sapiens
Description:
HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to...
Closed
DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks: DistiLD
Database maintenance site:
Disease Systems Biology Group, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Organism(s) covered:
Homo sapiens
Description:
The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) r...
Database maintenance site:
Stanford University Center for Biomedical Informatics Research, University of Miami School of Medicine
Organism(s) covered:
All
Description:
RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts ...
Inactive
The Pain and Interoception Imaging Network: PAIN
Database maintenance site:
Gail and Gerald Oppenheimer Center for Neurobiology of Stress at UCLA, University of California
Organism(s) covered:
Homo sapiens
Description:
The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scan...
Database maintenance site:
University of Vienna, Department of Microbiology and Ecosystem Science
Organism(s) covered:
All
Description:
probeBase is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and ...
Database maintenance site:
BIOBIX (Lab of bioinformatics and computational genomics)
Organism(s) covered:
Description:
sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profil...
Inactive
WholeCellSimDB
Database maintenance site:
Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Description:
WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researcher...
Closed
Digenic diseases database: DIDA
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed infor...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, me...
Suspend
ProteoRed
Database maintenance site:
CIMA (Centro de Investigacion Medica Aplicada)
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordinatio...
Closed
openSNP
Database maintenance site:
Seven Bridges, openSNP Administrators
Organism(s) covered:
Homo sapiens
Description:
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data,...
Closed
National Database for Clinical Trials related to Mental Illness: NDCT
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
NDCT is an informatics platform for the sharing of clinical trial data funded by the National Instit...
Database maintenance site:
UCSD (University of California San Diego)
Organism(s) covered:
Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description:
The NIDDK Information Network provides access to large pools of data relevant to the mission of NIDD...
Database maintenance site:
CRIA (The Reference Center on Environmental Information)
Organism(s) covered:
All
Description:
speciesLink (also known as the Distributed Information System for Biological Collections: Integratin...
Inactive
Swedish Ocean Archive: SHARK
Database maintenance site:
SMHI (Swedish Meterological and Hydrological Institute)
Organism(s) covered:
All
Description:
SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data ...
Inactive
SICAS Medical Image Repository: SMIR
Database maintenance site:
Swiss Institute for Computer Assisted Surgery
Organism(s) covered:
Homo sapiens
Description:
The Sicas Medical Image Repository is a medical database for academic, scientific, technical and cli...
Database maintenance site:
BioComputing laboratory, University of Padua, Institue of Molecular Biology, gGmbH, Structural Bioinformatics and Molecular Modelling Group, CRBM
Organism(s) covered:
All
Description:
RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structur...
Database maintenance site:
Cambridge Systems Biology Centre, University of Cambridge
Organism(s) covered:
Anopheles gambiae | Caenorhabditis elegans | Drosophila melanogaster
Description:
FlyMine is an integrated database of genomic, expression and protein data for Drosophila, Anopheles ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The Trace Archives includes the following archives: The Sequence Read Archive (SRA) stores raw seque...
Inactive
iSpyBio
Database maintenance site:
Organism(s) covered:
All
Description:
iSpyBio is an intelligent and unbiased search engine for Life scientists. It ranks reagents by the n...
Inactive
bNAber
Database maintenance site:
Ragon Institute, SBMRI, Sanford-Burnham Prebys Medical Discovery Institute, TSRI
Organism(s) covered:
Homo sapiens | Human immunodeficiency virus
Description:
The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV...
Database maintenance site:
UCSF (Laboratory of Andrej Sali, University of California at San Francisco)
Organism(s) covered:
All
Description:
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models...
Database maintenance site:
CiteAB, STORM Consultancy
Organism(s) covered:
All | Mus musculus | Xenopus
Description:
CiteAb is the largest citation-ranked antibody search engine and provides a simple way to find antib...
Database maintenance site:
Jurisica Lab, Ontario Cancer Institute
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukar...
Database maintenance site:
University of Toronto
Organism(s) covered:
Escherichia coli
Description:
Bacteriome.org is a database integrating physical (protein-protein) and functional interactions with...
Database maintenance site:
The National Autonomous University of Mexico at the Center for Genomic Sciences, University of Mexico
Organism(s) covered:
Escherichia coli
Description:
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of ...
Database maintenance site:
Manchester Center for Integrative Systems Biology
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence ...