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The Improved Database Of Chimeric Transcripts and RNA-Seq Data: ChiTaRS

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC01940
Database nameName of the database The Improved Database Of Chimeric Transcripts and RNA-Seq Data
Alternative nameAlternative name of the database ChiTaRS
URLURL of the database http://chitars.md.biu.ac.il/
Database maintenance siteSite maintaining the database
Country/RegionCountry or region name where the database maintenance site is located Israel, Spain
Database descriptionDatabase descirption The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different genes. By analyzing thousands of chimeric ESTs by RNA sequencing, we found that the expression level of chimeric ESTs is generally low and they are highly tissue specific in normal cells. Here we present the improved version of the ChiTaRS database (ChiTaRS-5.0) with more then (66,243 + 41,584 + 3,052 + 19 + 67 + 20 + 292 + 305) = 111,582 chimeric transcripts in humans, mice, fruit flies, rats, zebrafishes, cows, pigs, and yeast. In the current version we extended the experimental data evidence as well as included a novel type of the sense-antisense chimeric transcripts of the same gene confirmed experimentally by RT-PCR, qPCR, RNA-sequencing and mass-spec peptides. In addition, we collected 23,167 human cancer breakpoints with the expression levels of chimeric RNAs confirmed by the paired-end RNA-sequencing experiments in different tissues in humans, mice and fruit flies.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Bos taurus (9913), Danio rerio (7955), Drosophila melanogaster (7227), Homo sapiens (9606), Mus musculus (10090), Rattus norvegicus (10116), Saccharomyces cerevisiae (4932), Sus scrofa (9823)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:23143107
DOI:-
PubMed ID:25414346
DOI:-
PubMed ID:27899596
DOI:-
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Inactive
Link(s) to Downloadable dataLinks to downloadable data ―
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/10.25504/FAIRsharing.gg60g3
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer See the corresponding part in the FAIRsharing record
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2019-03-28
Last update date of this recordLast update date of this English record 2024-07-28
Record license Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license