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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Fagopyrum esculentum
Description:
BGDB is a genome database for Buckwheat. It provides a draft assembly sequence of the genome using s...
Database maintenance site:
Medical Mycology Research Center, Chiba University
Organism(s) covered:
Fungi | Actinobacteria
Description:
This is a catalog about strains of pathogenic fungi and actinomycetes isolated or stocked at the Med...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Archaea | Bacteria | Apicomplexa | Mycetozoa | Fungi | ...
Description:
RECOG is a workbench software program using the MBGD (Microbial Genome Database for Comparative Anal...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Arabidopsis thaliana
Description:
AtMetExpress LC-MS is a phytochemical atlas of Arabidopsis thaliana. Here, following two datasets ar...
Database maintenance site:
JT Biohistory Research Hall
Organism(s) covered:
Parasteatoda tepidariorum | Ligia exotica | Caridina multidentata | Hexapoda | Viridiplantae
Description:
This site is a portal site of data resources provided by the JT Biohistory Research Hall. It contain...
Database maintenance site:
United Centers for Advanced Research and Translational Medicine, Tohoku University Graduate School of Medicine
Organism(s) covered:
Homo sapiens
Description:
This site provides pdbBAM files those are binary sequence alignment/mapping (BAM) formatted file, in...
Database maintenance site:
International Institute of Molecular and Cell Biology in Warsaw
Organism(s) covered:
Homo sapiens | Escherichia coli | Saccharomyces cerevisiae
Description:
REPAIRtoire is a database for DNA damage and repair. The database contains the following types of in...
Database maintenance site:
Soka University Faculty of Science and Engineering
Organism(s) covered:
Bacteria | Fungi | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description:
MCAW-DB is a database whereby users can view the multiple alignment analysis results obtained from t...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Viridiplantae
Description:
PCIDB is a database to elucidate therapeutic effect of plants on human. It provides integrated data ...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program), DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Homo sapiens
Description:
TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected ...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description:
WABI is a web API for using the search services of the DNA Data Bank of Japan (DDBJ) without needing...
Database maintenance site:
LPixel Inc.
Organism(s) covered:
Description:
This is a collection of miscellaneous plugins for ImageJ that is an open source image processing pro...
Database maintenance site:
Soka University Faculty of Science and Engineering
Organism(s) covered:
Description:
RINGS is a freely available Web resource for academic glycobiologists to analyze their data using th...
Database maintenance site:
Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered:
Homo sapiens | Mus musculus | Arabidopsis thaliana | Pan troglodytes | Rhesus macaque | ...
Description:
NGSmethDB is a database for whole genome methylomes generated from short-read data sets obtained by ...
Database maintenance site:
Max Planck Institute for Informatics
Organism(s) covered:
Homo sapiens
Description:
DeepBlue provides a programmatic interface for finding, selecting, filtering, summarizing and downlo...
Database maintenance site:
Bioinformatics Laboratory of Meiji University
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa
Description:
PlantExpress is a platform for gene expression network (GEN) analysis with the public microarray dat...
Database maintenance site:
The University Museum, The University of Tokyo
Organism(s) covered:
Aceraceae | Adoxaceae | Annonaceae | Aquifoliaceae | Araceae | ...
Description:
This is a database of type specimens of species and infraspecific taxa of the plant families preserv...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Oryzias
Description:
This database provides metadata of the NBRP medaka database ( https://integbio.jp/dbcatalog/en/recor...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
PURL is a server for Persistent Uniform Resource Locators (URLs). On this site, users allows to crea...
Database maintenance site:
MMRC (Medical Mycology Research Center MMRC, Chiba University)
Organism(s) covered:
Fungi | Actinobacteria | Amoeba | Babesia | Blastocystis | ...
Description:
National Bioresource Project - 'Pathogenic eukaryotic microorganisms' collects reliable strains of p...
Database maintenance site:
GCMR (Center for Conservation of Microbial Genetic Resource, Organization for Research and Community Development, Gifu University)
Organism(s) covered:
Bacteria
Description:
National Bioresource Project - 'Pathogenic bacteria' collects reliable strains of pathogenic bacteri...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Arabidopsis thaliana | Dianthus caryophyllus | Cyclamen persicum | Chrysanthemum morifolium | Eustoma exaltatum subsp. Russellianum | ...
Description:
This database provides information of phenotype in transgenic plants created by CRES-T (Chimeric REp...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Description:
CobWeb is a database of alkaloid pathways. Users can browse pathways from the pathway map ID list. P...
Database maintenance site:
JCVI (J. Craig Venter Institute)
Organism(s) covered:
Medicago truncatula
Description:
This is the genome database for Medicago truncatula, a model legume. It currently hosts the latest v...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Description:
"Twins" retrieves similar metabolites in chemical structure when user input KNApSAcK CID and Similar...
Database maintenance site:
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University
Organism(s) covered:
Oryza sativa
Description:
RiceVarMap v2.0 is a comprehensive database for rice genomic variation and its functional annotation...
Database maintenance site:
Structural Bioinformatics Group, National University of Quilmes
Organism(s) covered:
Bacteria | Eukaryota | Archaea | Avsunviroidae | Pospiviroidae | ...
Description:
CoDNaS is a database of redundant crystallographic structures for a given protein extensively linked...
Database maintenance site:
Barts Cancer Institute
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
PED is a repository for pancreatic-derived -omics data. The database provides the research community...
Database maintenance site:
IRRI (International Rice Research Institute)
Organism(s) covered:
Oryza sativa
Description:
Rice SNP-Seek Database provides Genotype, Phenotype, and Variety Information for rice (Oryza sativa ...
Database maintenance site:
Japan Council for Quality Health Care
Organism(s) covered:
Homo sapiens
Description:
This service provides information to medical professionals and patients on relevant treatment therap...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Description:
This is a collection of user dictionaries of Japanese technical terms in scientific field, which ca...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Homo sapiens
Description:
KEGG NETWORK accumulates variations of molecular interaction/reaction networks in Homo sapiens disti...
Database maintenance site:
National Center for Global Health and Medicine
Organism(s) covered:
Homo sapiens
Description:
Medical Genomics Japan Variant Database (MGeND) provides the integrated information of genomic varia...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
Computational metabolomics is a collection about computational tools for metabolomics. It contains M...
Database maintenance site:
Harvard Medical School, Stanley Center for Psychiatric Research at Broad Institute
Organism(s) covered:
Mus musculus
Description:
DropViz provides the Drop-seq data of single-cell RNA sequencing of 690,000 cells sampled from nine ...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Homo sapiens
Description:
PubCaseFinder is a database of human disease-phenotype associations which employs a text mining-base...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Allium cepa | Allium sativum | Allium fistulosum
Description:
RIKEN HIFI is a tool for Liquid Chromatography-Fourier transfer ion cyclotron resonance-mass spectro...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Viridiplantae
Description:
ReSpect is a web-based database of MS/MS data pertaining to phytochemicals. It collects MSn spectra ...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Arabidopsis thaliana
Description:
MeKO is a database of metabolomic data for Arabidopsis thaliana. It contains profiling data of metab...
Database maintenance site:
Computational Biology Institute
Organism(s) covered:
Arabidopsis thaliana | Oryza barthii | Oryza brachyantha | Oryza glaberrima | Oryza meridionalis | ...
Description:
AgroLD is a RDF knowledge base that consists of data integrated from a variety of plant resources an...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Hevea brasiliensis
Description:
Rubber Genome & Transcriptome Database provides rubber tree genome sequence and multi-transcriptomic...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
Oligonucleic Acid Drug Database is focused on nucleic acid drugs known as biopharmaceuticals and dis...
Database maintenance site:
NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Description:
The ASEAN-Japan Chemical Safety Database (AJCSD) is a database co-developed by ASEAN countries and J...
Database maintenance site:
NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Bacteria
Description:
MiFuP Safety is a free web application that can assess whether a given microbe has any hazardous pro...
Database maintenance site:
University of Tsukuba Graduate School of Life and Environmental Sciences
Organism(s) covered:
Cucumis melo
Description:
Melonet DB is a database about whole gene expression in muskmelon (Cucumis melo L.). It contains exp...
Database maintenance site:
Karydo TherapeutiX, Inc.
Organism(s) covered:
Mus musculus
Description:
This database provides gene expression data after a drug administration and their analysis results u...
Database maintenance site:
Thermo Fisher Scientific Inc.
Organism(s) covered:
Homo sapiens
Description:
Oncomine™ is a database for cancer microarray and a web application to integrate profiling-data of c...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
The BMRBj Data Server provides NMR-STAR data in BMRB (http://integbio.jp/dbcatalog/record/nbdc00380 ...
Database maintenance site:
Department of Computer Science and Engineering, Yuan Ze University
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
RegPhos is a database for kinases and their substrates. It provides the information that basic descr...
Database maintenance site:
BioModels.net Team, EMBL-EBI
Organism(s) covered:
Description:
BioModels Database is a repository of mathematical models relate to biological and biomedical field....