List of Database Records (records: 2176)
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Database maintenance site:
MCPSB (Manitoba Centre for Proteomics and Systems Biology)
Organism(s) covered:
All
Description:
The Global Proteome Machine Database (gpmDB holds the minimum amount of information necessary for co...
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LBNL (Lawrence Berkeley National Laboratory)
Organism(s) covered:
All
Description:
A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classif...
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Organism(s) covered:
Description:
The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional prot...
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Krasnow Institute for Advanced Study, The National Academies of Sciences, Engineering, and Medicine
Organism(s) covered:
Metazoa
Description:
NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated wi...
Database maintenance site:
Biological Sciences Research Group, Instituto Superior Técnico, Knowledge Discovery & Bioinformatics Research Group, Instituto Superior Técnico
Organism(s) covered:
Description:
YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated reposito...
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Kansas State University
Organism(s) covered:
Tribolium castaneum
Description:
BeetleBase is a community resource for Tribolium genetics, genomics and developmental biology. The d...
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DOE JGI (Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory)
Organism(s) covered:
Bacteria | Eukaryota | Fungi
Description:
The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform...
Database maintenance site:
Infrafrontier Research Infrastructure, Infrafrontier Gmbh
Organism(s) covered:
Mus musculus
Description:
The European Mouse Mutant Archive (EMMA) is a non-profit repository for the collection, archiving (v...
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Iowa State University
Organism(s) covered:
Glycine max | Glycine soja
Description:
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally cur...
Database maintenance site:
International Union of Basic and Clinical Pharmacology
Organism(s) covered:
Homo sapiens | Mus musculus | Plasmodium falciparum | Rattus
Description:
The information in the database is presented at two levels: the initial view or landing pages for ea...
Database maintenance site:
IMA (International Mycological Association), NLM (National Library of Medicine)
Organism(s) covered:
Fungi
Description:
MycoBank was created for the mycological community (as well as scientific community more generally) ...
Database maintenance site:
Institute of Bioinformatics
Organism(s) covered:
Homo sapiens
Description:
Human Proteinpedia is a community portal for sharing and integration of human protein data. It allow...
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ISSBAT (Higher Institute of Applied Biological Sciences of Tunis), Laval University
Organism(s) covered:
Bacteria
Description:
BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by bo...
Database maintenance site:
ISB (Institute for Systems Biology), Seattle Proteome Center
Organism(s) covered:
Apis | Bos taurus | Caenorhabditis elegans | Candida | Danio rerio | ...
Description:
The PeptideAtlas Project provides a publicly-accessible database of peptides identified in tandem ma...
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Organism(s) covered:
Description:
SagaList contains a database dedicated to the analysis of the genomes of the food-borne pathogen, St...
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Organism(s) covered:
Description:
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. ...
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Description:
Its purpose is to collate and integrate various aspects of the genomic information from M. pulmonis,...
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Description:
ListiList is a database dedicated to the analysis of the genomes of the food-borne pathogen, Listeri...
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Organism(s) covered:
Description:
LegioList is a database dedicated to the analysis of the genomes of Legionella pneumophila strain Pa...
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Description:
Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the...
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Organism(s) covered:
Description:
A database dedicated to the analysis of the genome of Mycobacterium ulcerans, the Buruli ulcer bacil...
Database maintenance site:
INSERM (Institut National de la Sante et de la Recherche Medicale)
Organism(s) covered:
Viruses
Description:
VirHostNet 2.0 integrates an extensive and original literature-curated dataset of virus/virus and vi...
Database maintenance site:
National Institute of Agrobiological Sciences, ProDom Team
Organism(s) covered:
Spodoptera frugiperda
Description:
SpodoBase is an integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It is...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
Daphnia | Daphnia magna | Daphnia pulex
Description:
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
Anopheles gambiae | Arabidopsis thaliana | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | ...
Description:
euGenes provides a common summary of gene and genomic information from eukaryotic organism databases...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
All
Description:
The Database of Protein Disorder (DisProt) is a curated database that provides information about int...
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Indian Institute of Science
Organism(s) covered:
All
Description:
Conformation Angles DataBase [ CADB-3.0 ] is a comprehensive, authoritative and timely knowledge bas...
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University of Tampere
Organism(s) covered:
Homo sapiens
Description:
KinMutBase is a comprehensive database of disease-causing mutations in protein kinase domains. This ...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory), bioinsilico.org
Organism(s) covered:
All
Description:
ArchDB is a compilation of structural classifications of loops extracted from known protein structur...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory)
Organism(s) covered:
Gallus gallus | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
ABS is a database of Annotated regulatory Binding Sites from known binding sites identified in promo...
Database maintenance site:
IGBMC (Institut de Genetique et de Biologie Moleculaire et Cellulaire), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
All
Description:
BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequence...
Database maintenance site:
ICGEB (International Centre Genetic Engineering and Biotechnology), Jedlik Laboratories: Bioinformatics, Faculty of Information Technology, Pázmány Péter Catholic University
Organism(s) covered:
All
Description:
The Protein Classification Benchmark Collection was created in order to create standard datasets on ...
Database maintenance site:
CNRS (The National Centre for Scientific Research), IBCP (Institut de Biologie et Chimie des Proteines, Centre National de la Recherche Scientifique), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
Hepatitis C virus
Description:
The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structu...
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FAIRDOM, HITS (Heidelberg Institute for Theoretical Studies)
Organism(s) covered:
All
Description:
SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and...
Database maintenance site:
Health Canada
Organism(s) covered:
Homo sapiens
Description:
The Health Canada Drug Product Database contains product specific information on drugs approved for ...
Suspend
The Gene Index Project: TIGR_TGI
Database maintenance site:
Harvard University, Dana-Farber Cancer Institute
Organism(s) covered:
All
Description:
The goal of The Gene Index Project is to use the available EST and gene sequences, along with the re...
Database maintenance site:
Forsyth Institute
Organism(s) covered:
Bacteria | Fungi
Description:
The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the mo...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia, Wellcome Sanger Institute
Organism(s) covered:
Eukaryota | Leishmania | Leishmania major | Trypanosoma brucei | Trypanosoma cruzi | ...
Description:
TriTrypDB is one of the databases that can be accessed through the VEuPathDB portal, covering eukary...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Eukaryota | Trichomonas
Description:
TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; form...
Database maintenance site:
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Toxoplasma
Description:
ToxoDB is a free online resource that provides access to genomic and functional genomic data for Tox...
Database maintenance site:
Organism(s) covered:
Plasmodium
Description:
PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens ...
Database maintenance site:
Organism(s) covered:
Eukaryota | Giardia
Description:
A detailed study of Giardia lamblia's genome will provide insights into an early evolutionary stage ...
Database maintenance site:
Institute of Integrative Biology, University of Liverpool, The Wellcome Trust Centre for Molecular Parasitology, Wellcome Sanger Institute, Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Acanthamoeba | Aedes aegypti | Anncaliia | Anopheles gambiae | Babesia | ...
Description:
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic path...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Cryptosporidium
Description:
CryptoDB serves as the functional genomics database for Cryptosporidium and related species. CryptoD...
Database maintenance site:
Computational Biology Research Group , Embrapa/Informatica Agropecuaria
Organism(s) covered:
All
Description:
The Blue Star STING database stores information on the interactions between proteins and other bio m...
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Organism(s) covered:
Homo sapiens
Description:
SIDER contains information on marketed medicines and their recorded adverse drug reactions. The info...
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Description:
The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequenc...
Database maintenance site:
HUGO (Human Genome Organisation), Transforming Genetic Medicine Initiative
Organism(s) covered:
Homo sapiens
Description:
The HUGO Gene Nomenclature Committee (HGNC) aims to assign a unique and ideally meaningful name and ...
Database maintenance site:
CRG (Comparative Genomics Group), ELIXIR, Wellcome Genome Campus, LMB (MRC Laboratory of Molecular Biology), EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Homo sapiens
Description:
The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of person...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), wwPDB, EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
All
Description:
The Chemical Component Dictionary is an external reference file describing all residue and small mol...