List of Database Records (records: 2170)
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Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Description:
The Metabolite Ecology DB is a collection of information on the distribution of metabolites in vario...
Database maintenance site:
Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description:
Database maintenance site:
Howard Hughes Medical Institute
Organism(s) covered:
Description:
iPfam is a database about physical interactions of proteins that have a known structure reported in ...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Metazoa | Ascomycota | Salpingoecidae | Arabidopsis thaliana
Description:
TreeFam is a database of phylogenetic trees inferred from animal genomes. It provides the following ...
Database maintenance site:
University of Montana
Organism(s) covered:
Homo sapiens | Mus musculus | Danio rerio | Nematoda | Drosophila
Description:
This database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (H...
Database maintenance site:
jPOST project
Organism(s) covered:
All
Description:
This is a proteomic database named jPOST to integrate proteome information including post-translatio...
Database maintenance site:
ORFeome Collaboration
Organism(s) covered:
Homo sapiens
Description:
This database provides information on a set of full-length, high quality human clones ORF (Open Read...
Database maintenance site:
University of Leipzig, University of Strasbourg
Organism(s) covered:
Eumetazoa | Placozoa | Porifera
Description:
mitotRNAdb is a database of mitochondrial tRNA genes.
It collects more than 30000 tRNA genes from m...
Database maintenance site:
Shujiro Okuda laboratory
Organism(s) covered:
Bacteria | Archaea
Description:
HEMM is a database about microbial genomes and virtual metagenomes reconstructed from 16S rRNAs in m...
Database maintenance site:
SCADS (Screening Committee of Anticancer Drugs)
Organism(s) covered:
Homo sapiens
Description:
This site provides gene expression profiles and related analytical tools to evaluate potential of ch...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This is a search tool for compounds in RIKEN Natural products depository (RIKEN NPdepo). Each entry ...
Database maintenance site:
MSKCC (Memorial Sloan-Kettering Cancer Center)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans
Description:
This site provides a comprehensive resource of microRNA target predictions and expression profiles. ...
Database maintenance site:
Nigel Collier
Organism(s) covered:
Description:
Database maintenance site:
Center for iPS Cell Research and Application, Kyoto University
Organism(s) covered:
Homo sapiens
Description:
CiRA Research Activities is a portal site for introducing research activities of CiRA, Center for iP...
Database maintenance site:
Dana-Farber Cancer Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus
Description:
geneSigDB is a database of fully traceable, standardized, annotated gene signatures which have been ...
Database maintenance site:
Keio University
Organism(s) covered:
Dugesia japonica
Description:
This database is a sexualized planarian expressed sequence tag database. It contains sequence, class...
Database maintenance site:
Yale University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
HBT is a database of transcriptome data and associated metadata for the developing and adult human b...
Database maintenance site:
ICGC (International Cancer Genome Consortium)
Organism(s) covered:
Homo sapiens
Description:
This is the ICGC, International Cancer Genome Consortium, Data Portal, which provides tools for visu...
Database maintenance site:
Meiji University
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Physcomitrella patens | Solanum lycopersicum | Sorghum bicolor | ...
Description:
This database is a next-generation sequencing (NGS)-derived gene expression network (GEN) repository...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Solanum lycopersicum
Description:
This is a database for 5’- and 3’-terminal sequences of clones those constitutes a BAC clone library...
Database maintenance site:
JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:
Chlorophyta | Phaeophyceae | Rhodophyta | Characeae | Tracheophyta
Description:
This is a Web based pictorial database for common underwater plants in Thailand.
The international ...
Database maintenance site:
JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:
Bacteria | Fungi
Description:
Fermented foods in Thailand are classified by ingredients and described with pictures. Scientific na...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Marchantia polymorpha
Description:
MarpolBase is a genome database for Marchantia polymorpha, which includes complete genome sequence (...
Database maintenance site:
The University Museum, The University of Tokyo
Organism(s) covered:
Description:
This site is an online catalog of zoological collections of The University Museum, The University of...
Database maintenance site:
The University Museum, The University of Tokyo
Organism(s) covered:
Description:
This database provides paleontology collections in the University Museum, the University of Tokyo. ...
Database maintenance site:
Kobe University
Organism(s) covered:
Description:
M-path DB is a database of metabolic pathways calculated sets of compounds from the PubChem and ChEB...
Database maintenance site:
ViBrism Database Committee
Organism(s) covered:
Mus musculus
Description:
ViBrism Database is a 3D-map database of endogenous gene expression in a virtual whole mouse brain. ...
Database maintenance site:
Japanese DNA Barcode Database Committee
Organism(s) covered:
Gastropoda | Bivalvia | Squamata | Hirudinea | Elateridae | ...
Description:
JBOL-DB is a database of voucher specimen combined with their sequences for DNA barcoding. It contai...
Database maintenance site:
Atmosphere and Ocean Research Institute, University of Tokyo
Organism(s) covered:
Copepoda | Appendicularia | Mysidacea | Chaetognatha
Description:
Database maintenance site:
Hokkaido University
Organism(s) covered:
Synechocystis sp. PCC 6803 | Arabidopsis thaliana
Description:
PCoM is a database of protein complexes for photosynthetic organisms. This database stores the data ...
Database maintenance site:
Bioinformatics Laboratory of Meiji University
Organism(s) covered:
Solanum lycopersicum
Description:
TOMATOMICS is an integrated omics database of Solanum lycopersicum. It contains sequences of all Sol...
Database maintenance site:
Kyushu University Graduate School of Medical Sciences, DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
ChIP-Atlas is an integrative database for visualizing and exploiting public ChIP-seq data. This data...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
The original site (http: //red.dna.affrc.go.jp/INAHO/) has been closed. The RED II INAHO is availab...
Database maintenance site:
National Institute of Public Health
Organism(s) covered:
Homo sapiens
Description:
The NIPH Clinical Trials Search is a portal site to cross-search the content of three national clini...
Database maintenance site:
The institute of medical science, The University of Tokyo
Organism(s) covered:
Homo sapiens
Description:
OpenTein (Open Teratoma Investigation) is a database and repository for the digital images of stem c...
Database maintenance site:
Tohoku University museum
Organism(s) covered:
Foraminifera
Description:
E-Foram Stock is a database of planktonic foraminifera e-specimens (digital data), stored in the Toh...
Database maintenance site:
Research Institute for Sustainable Humanosphere, Kyoto University
Organism(s) covered:
Tracheophyta
Description:
Wood Diversity HSDB network is a collection of Wood Diversity databases maintained by universities i...
Database maintenance site:
Japan Monkey Centre
Organism(s) covered:
Primates
Description:
CaPriCo is a database of specimens in the captive Primate collection at Japan Monkey Centre. It cont...
Database maintenance site:
JT Biohistory Research Hall
Organism(s) covered:
Parasteatoda tepidariorum
Description:
Pt_spiderBASE is a database for ESTs of the spider Parasteatoda tepidariorum, a model arthropod to s...
Database maintenance site:
Keio University
Organism(s) covered:
Mus musculus
Description:
MMMDB is a freely available database containing a collection of metabolites measured from multiple t...
Database maintenance site:
Tokyo Metropolitan Institute of Medical Science
Organism(s) covered:
Callithrix jacchus
Description:
This database is a collection of section images from the brain and spinal cord of the common marmose...
Database maintenance site:
Research Institute for Sustainable Humanosphere, Kyoto University
Organism(s) covered:
Sophora flavescens | Lithospermum erythrorhizon
Description:
This Plant gene Database contains plant gene information focusing on the secondary metabolism and th...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Mus musculus
Description:
SDOP-DB is a comparative standardised-protocol database for the integration and sharing of mouse phe...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Mus musculus
Description:
Pheno-Pub provides information of mouse phenotyping analysis. It contains results of the mouse pheno...
Database maintenance site:
DBCLS(Database Center for Life Science)
Organism(s) covered:
All
Description:
This is a portal site that integrates life science databases in RDF format. The portal is a data por...
Database maintenance site:
Tokai University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
VaDE is a database of human genome polymorphisms involved in traits such as various disease suscepti...
Database maintenance site:
Ehime University Center for Marine Environmental Studies
Organism(s) covered:
Metazoa
Description:
es-BANK is a collection of environmental specimens collected from all over the world and stored at E...
Database maintenance site:
National Institute for Basic Biology
Organism(s) covered:
Bacteria | Archaea | Apicomplexa | Fungi | Chordata | ...
Description:
MBGD SPARQL Search is a search tool for the Microbial Genome Database for Comparative Analysis (MBGD...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
PDB/RDF is a collection of PDB data in the Resource Description Framework (RDF) format. Users can se...
Database maintenance site:
NCBO (The National Center for Biomedical Ontology)
Organism(s) covered:
Bacteria
Description:
MCCV collects structured controlled vocabulary for describing meta information of microbial culture ...