List of Database Records (records: 2197)
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Database maintenance site:
NIH Roadmap Epigenomics Mapping Consortium
Organism(s) covered:
Homo sapiens
Description:
This is a portal site of Roadmap Epigenomics Project. The NIH Roadmap Epigenomics Mapping Consortium...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
REFOLDdb is a database for the protein refolding methods, which based on published papers written ab...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Chironomidae
Description:
Chironomid DNA Barcode Database is a search system for DNA barcoding information on chironomid speci...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Eumetazoa | Embryophyta
Description:
JaLTER Data Catalog Search is a search system for ecological observation database managed by JaLTER ...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Embryophyta
Description:
TroCEP provides information on tropical coastal ecosystems; world distribution maps, plant species l...
Database maintenance site:
North Carolina State University
Organism(s) covered:
Description:
Dryad is a repository for data files associated with published scientific and medical literature. Us...
Database maintenance site:
FAIRsharing
Organism(s) covered:
Description:
This site for FAIRsharing.org is a registry site intended to promote data-sharing in the sciences, s...
Database maintenance site:
U.S. Department of Health & Human Services
Organism(s) covered:
Description:
HealthData.gov is a repository of health data. It contains information about clinical care provider ...
Database maintenance site:
KANPHOS Platform Committee
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Caenorhabditis elegans
Description:
KANPHOS is a database for proteins that related to kinase-associated phospho-signaling systems in ne...
Database maintenance site:
Nagoya University, Graduate School of Information Science
Organism(s) covered:
Description:
The PSCDB contains information on the relationship between protein structural changes and ligand bin...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Arabidopsis thaliana
Description:
The TF clone database provides the information of ORF clones (without STOP codons) of Arabidopsis tr...
Database maintenance site:
Ehime University
Organism(s) covered:
Description:
ChemTHEATRE is a database to deposit and visualize monitoring data of environmental contaminants, es...
Database maintenance site:
The University of Tokyo The University Museum
Organism(s) covered:
Moniliformopses
Description:
Flora of Nepal Database (Ferns and its allies) is a database of specimens of pteridophytes in Nepal ...
Database maintenance site:
Department of Molecular Genetics, University of Toronto
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans
Description:
RBPDB is a collection of RNA-binding proteins linked to a curated database of published observations...
Database maintenance site:
University of Delaware, Georgetown University Medical Center
Organism(s) covered:
Homo sapiens | Mus musculus | Escherichia coli
Description:
PRO provides an ontological representation of protein-related entities by unambiguously defining the...
Database maintenance site:
Department of Computational and Data Science, Indian Institute of Science
Organism(s) covered:
Bacteria | Archaea
Description:
WebGeSTer DB is a database of intrinsic transcription terminators, and comprises of >2,200,000 termi...
Database maintenance site:
Korean BioInformation Center
Organism(s) covered:
Homo sapiens
Description:
VnD is a integrated database of the trilateral relationship among genomic variations, human diseases...
Database maintenance site:
Division of Computational Systems Biology, University of Vienna
Organism(s) covered:
Bacteria
Description:
The Effective is a database for bioinformatic identification of eukaryotic-like domains that is perf...
Database maintenance site:
Center for Informational Biology, Ochanomizu University
Organism(s) covered:
Embryophyta
Description:
RESOPS is a database for analyzing the correspondence of RNA editing sites to protein 3D structures....
Database maintenance site:
The Royal Liverpool and NHS Broadgreen Hospitals, University of Liverpool
Organism(s) covered:
Homo sapiens
Description:
AFND is a public database containing frequency information of several immune genes such as Human Leu...
Database maintenance site:
The CUCKOO Workgroup
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Cavia porcellus | Plasmodium falciparum | ...
Description:
CPLA is a compendium database for lysine acetylated substrates. It contains 3,311 unique protein ent...
Database maintenance site:
EuPathDB Project Team
Organism(s) covered:
Anncaliia algerae | Edhazardia aedis | Encephalitozoon cuniculi | Encephalitozoon hellem | Encephalitozoon intestinalis | ...
Description:
MicrosporidiaDB is a functional genomic database serving the microsporidia research communities. Mic...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mammalia
Description:
The RIKEN integrated database of mammals collects data from large-scale programs using mammals in RI...
Database maintenance site:
SickKids (The Hospital for Sick Children)
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
DAnCER is a database which integrates information on genes with chromatin modification (CM) function...
Database maintenance site:
University of Southampton
Organism(s) covered:
Homo sapiens
Description:
DBASS is a comprehensive repository of new exon boundaries that were induced by pathogenic mutations...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
KERO is a database that integrates single nucleotide variations, epigenomic data (histone modificati...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
This site contains educational resources about PDBj. It is written to help a lay audience understand...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Description:
The Metabolite Ecology DB is a collection of information on the distribution of metabolites in vario...
Database maintenance site:
Japan Agency for Marine-Earth Science and Technology
Organism(s) covered:
Description:
Suspend
iPfam
Database maintenance site:
Howard Hughes Medical Institute
Organism(s) covered:
Description:
iPfam is a database about physical interactions of proteins that have a known structure reported in ...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Metazoa | Ascomycota | Salpingoecidae | Arabidopsis thaliana
Description:
TreeFam is a database of phylogenetic trees inferred from animal genomes. It provides the following ...
Database maintenance site:
University of Montana
Organism(s) covered:
Homo sapiens | Mus musculus | Danio rerio | Nematoda | Drosophila
Description:
This database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (H...
Database maintenance site:
jPOST project
Organism(s) covered:
All
Description:
This is a proteomic database named jPOST to integrate proteome information including post-translatio...
Database maintenance site:
ORFeome Collaboration
Organism(s) covered:
Homo sapiens
Description:
This database provides information on a set of full-length, high quality human clones ORF (Open Read...
Database maintenance site:
University of Leipzig, University of Strasbourg
Organism(s) covered:
Eumetazoa | Placozoa | Porifera
Description:
mitotRNAdb is a database of mitochondrial tRNA genes.
It collects more than 30000 tRNA genes from m...
Suspend
HEMM: Human-Earth Microbes and Microbiomes
Database maintenance site:
Shujiro Okuda laboratory
Organism(s) covered:
Bacteria | Archaea
Description:
HEMM is a database about microbial genomes and virtual metagenomes reconstructed from 16S rRNAs in m...
Database maintenance site:
SCADS (Screening Committee of Anticancer Drugs)
Organism(s) covered:
Homo sapiens
Description:
This site provides gene expression profiles and related analytical tools to evaluate potential of ch...
Database maintenance site:
MSKCC (Memorial Sloan-Kettering Cancer Center)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans
Description:
This site provides a comprehensive resource of microRNA target predictions and expression profiles. ...
Database maintenance site:
Nigel Collier
Organism(s) covered:
Description:
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
This is a search tool for compounds in RIKEN Natural products depository (RIKEN NPdepo). Each entry ...
Database maintenance site:
Center for iPS Cell Research and Application, Kyoto University
Organism(s) covered:
Homo sapiens
Description:
CiRA Research Activities is a portal site for introducing research activities of CiRA, Center for iP...
Suspend
GeneSigDB: Gene Signature DataBase
Database maintenance site:
Dana-Farber Cancer Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus
Description:
geneSigDB is a database of fully traceable, standardized, annotated gene signatures which have been ...
Database maintenance site:
Keio University
Organism(s) covered:
Dugesia japonica
Description:
This database is a sexualized planarian expressed sequence tag database. It contains sequence, class...
Database maintenance site:
Yale University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
HBT is a database of transcriptome data and associated metadata for the developing and adult human b...
Database maintenance site:
ICGC (International Cancer Genome Consortium)
Organism(s) covered:
Homo sapiens
Description:
This is the ICGC, International Cancer Genome Consortium, Data Portal, which provides tools for visu...
Database maintenance site:
Meiji University
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Physcomitrella patens | Solanum lycopersicum | Sorghum bicolor | ...
Description:
This database is a next-generation sequencing (NGS)-derived gene expression network (GEN) repository...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Solanum lycopersicum
Description:
This is a database for 5’- and 3’-terminal sequences of clones those constitutes a BAC clone library...
Database maintenance site:
JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:
Chlorophyta | Phaeophyceae | Rhodophyta | Characeae | Tracheophyta
Description:
This is a Web based pictorial database for common underwater plants in Thailand.
The international ...
Database maintenance site:
JIRCAS (Japan International Research Center for Agricultural Sciences)
Organism(s) covered:
Bacteria | Fungi
Description:
Fermented foods in Thailand are classified by ingredients and described with pictures. Scientific na...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Marchantia polymorpha
Description:
MarpolBase is a genome database for Marchantia polymorpha, which includes complete genome sequence (...