List of Database Records (records: 2186)
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Inactive
bNAber
Database maintenance site:
Ragon Institute, SBMRI, Sanford-Burnham Prebys Medical Discovery Institute, TSRI
Organism(s) covered:
Homo sapiens | Human immunodeficiency virus
Description:
The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV...
Database maintenance site:
UCSF (Laboratory of Andrej Sali, University of California at San Francisco)
Organism(s) covered:
All
Description:
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models...
Database maintenance site:
CiteAB, STORM Consultancy
Organism(s) covered:
All | Mus musculus | Xenopus
Description:
CiteAb is the largest citation-ranked antibody search engine and provides a simple way to find antib...
Database maintenance site:
The National Autonomous University of Mexico at the Center for Genomic Sciences, University of Mexico
Organism(s) covered:
Escherichia coli
Description:
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of ...
Database maintenance site:
Manchester Center for Integrative Systems Biology
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence ...
Database maintenance site:
University of Athens
Organism(s) covered:
All
Description:
GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs a...
Database maintenance site:
NTP (National Toxicology Program, NIEHS, NIH)
Organism(s) covered:
All
Description:
The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental ...
Database maintenance site:
University of California Los Angeles, University of Missouri, University of North Carolina, The Jackson Laboratory
Organism(s) covered:
Mus musculus
Description:
The MMRRC distributes and cryopreserves scientifically valuable, genetically engineered mouse strain...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Vertebrata
Description:
The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual ann...
Database maintenance site:
VSNU (Association of Universities in the Netherlands), DANS(Data Archiving and Networked Services)
Organism(s) covered:
Description:
NARCIS provides access to scientific information, including (open access) publications from the repo...
Database maintenance site:
PBIL
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
HOGENOM is a phylogenomic database providing families of homologous genes and associated phylogeneti...
Closed
National Database for Autism Research: NDAR
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for aus...
Database maintenance site:
Organism(s) covered:
Oryza
Description:
This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 1...
Database maintenance site:
Organism(s) covered:
Description:
dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and...
Database maintenance site:
NCBS (National Center for Biological Sciences)
Organism(s) covered:
All
Description:
SSToSS is a database which provides sequence-structural templates of single member protein domain su...
Database maintenance site:
CBIIT (Center for Biomedical Informatics and Information Technology), CCNEs (Centers of Cancer Nanotechnology Excellence), NLC (Nanotechnology Characterization Laboratory), NIH (National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
caNanoLab is a data sharing portal designed to facilitate information sharing across the internation...
Database maintenance site:
Organism(s) covered:
Description:
The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional prot...
Database maintenance site:
International Union of Basic and Clinical Pharmacology
Organism(s) covered:
Homo sapiens | Mus musculus | Plasmodium falciparum | Rattus
Description:
The information in the database is presented at two levels: the initial view or landing pages for ea...
Database maintenance site:
IMA (International Mycological Association), NLM (National Library of Medicine)
Organism(s) covered:
Fungi
Description:
MycoBank was created for the mycological community (as well as scientific community more generally) ...
Database maintenance site:
Institute of Bioinformatics
Organism(s) covered:
Homo sapiens
Description:
Human Proteinpedia is a community portal for sharing and integration of human protein data. It allow...
Database maintenance site:
ISSBAT (Higher Institute of Applied Biological Sciences of Tunis), Laval University
Organism(s) covered:
Bacteria
Description:
BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by bo...
Closed
Streptococcus agalactiae NEM316 / Serotype III genome database: SagaList
Database maintenance site:
Organism(s) covered:
Description:
SagaList contains a database dedicated to the analysis of the genomes of the food-borne pathogen, St...
Closed
Photorhabdus luminescens genome database: PhotoList
Database maintenance site:
Organism(s) covered:
Description:
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. ...
Closed
Mycoplasma pulmonis genome database: MypuList
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from M. pulmonis,...
Closed
Listeria innocua and Listeria monocytogenes genomes database: ListiList
Database maintenance site:
Organism(s) covered:
Description:
ListiList is a database dedicated to the analysis of the genomes of the food-borne pathogen, Listeri...
Closed
Legionella pneumophila genome database: LegioList
Database maintenance site:
Organism(s) covered:
Description:
LegioList is a database dedicated to the analysis of the genomes of Legionella pneumophila strain Pa...
Closed
Colibri
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the...
Closed
Buruli ulcer bacillus Database: BuruList
Database maintenance site:
Organism(s) covered:
Description:
A database dedicated to the analysis of the genome of Mycobacterium ulcerans, the Buruli ulcer bacil...
Database maintenance site:
INSERM (Institut National de la Sante et de la Recherche Medicale)
Organism(s) covered:
Viruses
Description:
VirHostNet is a bioinformatic information system dedicated to the biocuration, data integration, rep...
Database maintenance site:
Indian Institute of Science
Organism(s) covered:
All
Description:
Conformation Angles DataBase [ CADB-3.0 ] is a comprehensive, authoritative and timely knowledge bas...
Database maintenance site:
University of Tampere
Organism(s) covered:
Homo sapiens
Description:
KinMutBase is a comprehensive database of disease-causing mutations in protein kinase domains. This ...
Closed
The Gene Index Project: TIGR_TGI
Database maintenance site:
Harvard University, Dana-Farber Cancer Institute
Organism(s) covered:
All
Description:
The goal of The Gene Index Project is to use the available EST and gene sequences, along with the re...
Inactive
STING
Database maintenance site:
Computational Biology Research Group , Embrapa/Informatica Agropecuaria
Organism(s) covered:
All
Description:
The Blue Star STING database stores information on the interactions between proteins and other bio m...
Database maintenance site:
HUGO (Human Genome Organisation), Transforming Genetic Medicine Initiative
Organism(s) covered:
Homo sapiens
Description:
The HUGO Gene Nomenclature Committee (HGNC) aims to assign a unique and ideally meaningful name and ...
Database maintenance site:
Bioversity International
Organism(s) covered:
Oryza
Description:
Oryza Tag Line consists in a searchable database developed under the Oracle management system integr...
Database maintenance site:
CIRAD (International Cooperation Center for Agricultural Research for Development), Bioversity International, Generation Challenge Programme, South Green
Organism(s) covered:
Viridiplantae
Description:
GreenPhylDB comprises 37 full genomes from the major phylum of plant evolution. Clustering of these ...
Database maintenance site:
Cincinnati Children's Hospital Medical Center
Organism(s) covered:
Homo sapiens
Description:
An integrated database of human coding single nucleotide polymorphisms (SNPs) and their annotations.
Database maintenance site:
Cincinnati Children's Hospital Medical Center, NIH (National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
GenomeTraFaC is a database of conserved regulatory elements obtained by systematically analyzing the...
Database maintenance site:
Centro Biotecnologie Avanzate
Organism(s) covered:
Bacteria | Bacteriophage sp. | Fungi | Saccharomyces
Description:
CABRI provides an integrated resource including catalogues of strains of different organism types, g...
Database maintenance site:
CBI (Center for Bioinformatics, Peking University)
Organism(s) covered:
Viridiplantae
Description:
Plant Transcription Factor Database (PlantTFDB) provides a comprehensive, high-quality resource of p...
Database maintenance site:
Bonsai Bioinformatics
Organism(s) covered:
All
Description:
Norine is a platform that includes a database of nonribosomal peptides together with tools for their...
Database maintenance site:
BindingDB
Organism(s) covered:
Pan paniscus | Pan troglodytes | Rattus norvegicus | Sus scrofa | Teleostei | ...
Description:
BindingDB enables research by making a growing collection of high-quality, quantitative, protein-lig...
Database maintenance site:
BGI (Beijing Genomics Institute)
Organism(s) covered:
Influenza virus
Description:
IVDB hosts complete genome sequences of influenza A virus generated by BGI and curates all other pub...
Database maintenance site:
ATCC Standards Development Organisation
Organism(s) covered:
All
Description:
ATCC authenticates microorganisms and cell lines and manages logistics of long-term preservation and...
Database maintenance site:
Arizona State University, NIH (National Institutes of Health)
Organism(s) covered:
Archaea | Bacteria | Eukaryota | Viruses
Description:
DNASU is a central repository for plasmid clones and collections. Currently we store and distribute ...
Database maintenance site:
California Academy of Sciences
Organism(s) covered:
Formicidae
Description:
AntWeb is a website documenting the known species of ants, with records for each species linked to t...
Database maintenance site:
NASC (Nottingham Arabidopsis Stock Centre)
Organism(s) covered:
Arabidopsis thaliana | Brassica
Description:
The Nottingham Arabidopsis Stock Centre (NASC) provides seed and information resources to the Intern...
Database maintenance site:
Laboratory of Bioinformatics, Faculty of Biology, Adam Mickiewicz University
Organism(s) covered:
All
Description:
miRNEST is an integrative collection of animal, plant and virus microRNA data. miRNEST is being grad...
Database maintenance site:
ACPFG (Australian Centre For Plant Functional Genomics)
Organism(s) covered:
Brassica | Hordeum vulgare | Oryza sativa | Triticum
Description:
Implemented the SNP discovery software autoSNP within a relational database to enable the efficient ...
Database maintenance site:
EuroCarbDB, Justus-Liebig University Giessen, Justus-Liebig University Giessen
Organism(s) covered:
All
Description:
Database on carbohydrate building blocks / residues (monosaccharides). Provides various kinds of res...