List of Database Records (records: 2197)
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Inactive
iSpyBio
Database maintenance site:
Organism(s) covered:
All
Description:
iSpyBio is an intelligent and unbiased search engine for Life scientists. It ranks reagents by the n...
Inactive
bNAber
Database maintenance site:
Ragon Institute, SBMRI, Sanford-Burnham Prebys Medical Discovery Institute, TSRI
Organism(s) covered:
Homo sapiens | Human immunodeficiency virus
Description:
The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV...
Database maintenance site:
UCSF (Laboratory of Andrej Sali, University of California at San Francisco)
Organism(s) covered:
All
Description:
ModBase (http://salilab.org/modbase) is a database of annotated comparative protein structure models...
Database maintenance site:
CiteAB, STORM Consultancy
Organism(s) covered:
All | Mus musculus | Xenopus
Description:
CiteAb is the largest citation-ranked antibody search engine and provides a simple way to find antib...
Database maintenance site:
Jurisica Lab, Ontario Cancer Institute
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukar...
Database maintenance site:
University of Toronto
Organism(s) covered:
Escherichia coli
Description:
Bacteriome.org is a database integrating physical (protein-protein) and functional interactions with...
Database maintenance site:
The National Autonomous University of Mexico at the Center for Genomic Sciences, University of Mexico
Organism(s) covered:
Escherichia coli
Description:
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of ...
Database maintenance site:
Manchester Center for Integrative Systems Biology
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence ...
Database maintenance site:
University of Athens
Organism(s) covered:
All
Description:
GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs a...
Database maintenance site:
University of Maryland
Organism(s) covered:
Homo sapiens
Description:
Domain mapping of disease mutations (DMDM) is a database in which each disease mutation can be displ...
Closed
Aspergillus Genomes
Database maintenance site:
Organism(s) covered:
Description:
Aspergillus Genomes is a resource for viewing annotated genes arising from various Aspergillus seque...
Database maintenance site:
NTP (National Toxicology Program, NIEHS, NIH)
Organism(s) covered:
All
Description:
The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental ...
Database maintenance site:
University of California Los Angeles, University of Missouri, University of North Carolina, The Jackson Laboratory
Organism(s) covered:
Mus musculus
Description:
The MMRRC distributes and cryopreserves scientifically valuable, genetically engineered mouse strain...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Vertebrata
Description:
The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual ann...
Closed
TargetTrack
Database maintenance site:
Organism(s) covered:
Description:
TargetTrack, a target registration database, provides information on the experimental progress and s...
Database maintenance site:
VSNU (Association of Universities in the Netherlands), DANS(Data Archiving and Networked Services)
Organism(s) covered:
Description:
NARCIS provides access to scientific information, including (open access) publications from the repo...
Database maintenance site:
PBIL
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
HOGENOM is a phylogenomic database providing families of homologous genes and associated phylogeneti...
Closed
National Database for Autism Research: NDAR
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for aus...
Database maintenance site:
Organism(s) covered:
Oryza
Description:
This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 1...
Database maintenance site:
Organism(s) covered:
Description:
dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and...
Database maintenance site:
NCBS (National Center for Biological Sciences)
Organism(s) covered:
All
Description:
SSToSS is a database which provides sequence-structural templates of single member protein domain su...
Database maintenance site:
CBIIT (Center for Biomedical Informatics and Information Technology), CCNEs (Centers of Cancer Nanotechnology Excellence), NLC (Nanotechnology Characterization Laboratory), NIH (National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
caNanoLab is a data sharing portal designed to facilitate information sharing across the internation...
Database maintenance site:
LBNL (Lawrence Berkeley National Laboratory)
Organism(s) covered:
All
Description:
A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classif...
Database maintenance site:
Organism(s) covered:
Description:
The Protein Model DataBase (PMDB), is a database that collects manually built three dimensional prot...
Database maintenance site:
International Union of Basic and Clinical Pharmacology
Organism(s) covered:
Homo sapiens | Mus musculus | Plasmodium falciparum | Rattus
Description:
The information in the database is presented at two levels: the initial view or landing pages for ea...
Database maintenance site:
IMA (International Mycological Association), NLM (National Library of Medicine)
Organism(s) covered:
Fungi
Description:
MycoBank was created for the mycological community (as well as scientific community more generally) ...
Database maintenance site:
Institute of Bioinformatics
Organism(s) covered:
Homo sapiens
Description:
Human Proteinpedia is a community portal for sharing and integration of human protein data. It allow...
Database maintenance site:
ISSBAT (Higher Institute of Applied Biological Sciences of Tunis), Laval University
Organism(s) covered:
Bacteria
Description:
BACTIBASE contains calculated or predicted physicochemical properties of bacteriocins produced by bo...
Closed
Streptococcus agalactiae NEM316 / Serotype III genome database: SagaList
Database maintenance site:
Organism(s) covered:
Description:
SagaList contains a database dedicated to the analysis of the genomes of the food-borne pathogen, St...
Closed
Photorhabdus luminescens genome database: PhotoList
Database maintenance site:
Organism(s) covered:
Description:
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. ...
Closed
Mycoplasma pulmonis genome database: MypuList
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from M. pulmonis,...
Closed
Listeria innocua and Listeria monocytogenes genomes database: ListiList
Database maintenance site:
Organism(s) covered:
Description:
ListiList is a database dedicated to the analysis of the genomes of the food-borne pathogen, Listeri...
Closed
Legionella pneumophila genome database: LegioList
Database maintenance site:
Organism(s) covered:
Description:
LegioList is a database dedicated to the analysis of the genomes of Legionella pneumophila strain Pa...
Closed
Colibri
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the...
Closed
Buruli ulcer bacillus Database: BuruList
Database maintenance site:
Organism(s) covered:
Description:
A database dedicated to the analysis of the genome of Mycobacterium ulcerans, the Buruli ulcer bacil...
Database maintenance site:
INSERM (Institut National de la Sante et de la Recherche Medicale)
Organism(s) covered:
Viruses
Description:
VirHostNet is a bioinformatic information system dedicated to the biocuration, data integration, rep...
Database maintenance site:
Indian Institute of Science
Organism(s) covered:
All
Description:
Conformation Angles DataBase [ CADB-3.0 ] is a comprehensive, authoritative and timely knowledge bas...
Database maintenance site:
University of Tampere
Organism(s) covered:
Homo sapiens
Description:
KinMutBase is a comprehensive database of disease-causing mutations in protein kinase domains. This ...
Database maintenance site:
IGBMC (Institut de Genetique et de Biologie Moleculaire et Cellulaire), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
All
Description:
BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequence...
Closed
The Gene Index Project: TIGR_TGI
Database maintenance site:
Harvard University, Dana-Farber Cancer Institute
Organism(s) covered:
All
Description:
The goal of The Gene Index Project is to use the available EST and gene sequences, along with the re...
Inactive
STING
Database maintenance site:
Computational Biology Research Group , Embrapa/Informatica Agropecuaria
Organism(s) covered:
All
Description:
The Blue Star STING database stores information on the interactions between proteins and other bio m...
Database maintenance site:
HUGO (Human Genome Organisation), Transforming Genetic Medicine Initiative
Organism(s) covered:
Homo sapiens
Description:
The HUGO Gene Nomenclature Committee (HGNC) aims to assign a unique and ideally meaningful name and ...
Database maintenance site:
Organism(s) covered:
Description:
fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues...
Database maintenance site:
Bioversity International
Organism(s) covered:
Oryza
Description:
Oryza Tag Line consists in a searchable database developed under the Oracle management system integr...
Database maintenance site:
CIRAD (International Cooperation Center for Agricultural Research for Development), Bioversity International, Generation Challenge Programme, South Green
Organism(s) covered:
Viridiplantae
Description:
GreenPhylDB comprises 37 full genomes from the major phylum of plant evolution. Clustering of these ...
Database maintenance site:
Cincinnati Children's Hospital Medical Center
Organism(s) covered:
Homo sapiens
Description:
An integrated database of human coding single nucleotide polymorphisms (SNPs) and their annotations.
Database maintenance site:
Cincinnati Children's Hospital Medical Center, NIH (National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
GenomeTraFaC is a database of conserved regulatory elements obtained by systematically analyzing the...
Database maintenance site:
Centro Biotecnologie Avanzate
Organism(s) covered:
Bacteria | Bacteriophage sp. | Fungi | Saccharomyces
Description:
CABRI provides an integrated resource including catalogues of strains of different organism types, g...
Database maintenance site:
CBI (Center for Bioinformatics, Peking University)
Organism(s) covered:
Viridiplantae
Description:
Plant Transcription Factor Database (PlantTFDB) provides a comprehensive, high-quality resource of p...
Database maintenance site:
Human Microbiome Project, Broad Institute
Organism(s) covered:
Magnaporthe grisea
Description:
The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the ...