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List of Database Records (records: 2182)
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Organism covered
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Database maintenance site:
Oak Ridge National Laboratory
Organism(s) covered:
Description:
The Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC) mission is to assemb...
Suspend
CRISPRdb
Database maintenance site:
Universitè Paris-Sud 11, CNRS
Organism(s) covered:
Archaea | Bacteria
Description:
CRISPRdb acts as a gateway to a publicly accessible database and software. It enables the easy detec...
Database maintenance site:
Weizmann Institute of Science
Organism(s) covered:
Homo sapiens
Description:
The MalaCards human disease database (http://www. malacards.org/) is an integrated compendium of ann...
Database maintenance site:
Biozentrum, University of Basel
Organism(s) covered:
Caulobacter crescentus | Neisseria meningitidis | Streptomyces coelicolor | Streptomyces granaticolor
Description:
Proteomics database for streptomyces and caulobacter and neisseria. Unique database in the field, co...
Inactive
The Benchmark Energy & Geometry Database: BEGDB
Database maintenance site:
IOCB (Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences)
Organism(s) covered:
All
Description:
The Benchmark Energy & Geometry Database (BEGDB) collects results of highly accurate QM calculations...
Closed
Target Central Resource Database: TCRD
Database maintenance site:
European Commission FP7, Icahn School of Medicine at Mount Sinai, UNM School of Medicine, University of Miami School of Medicine
Organism(s) covered:
Homo sapiens
Description:
TCRD is the central resource behind the Illuminating the Druggable Genome Knowledge Management Cente...
Inactive
mirDNMR
Database maintenance site:
Wenzhou Medical University
Organism(s) covered:
Homo sapiens
Description:
mirDNMR is a database for the collection of gene-centered background DNMRs obtained from different m...
Database maintenance site:
REFLORA Programme
Organism(s) covered:
Chlorophyta | Phaeophyceae | Rhodophyta | Fungi | Viridiplantae
Description:
In 2010, Brazil published the Catalog of Plants and Fungi of Brazil and launched the first online ve...
Inactive
Database of local DNA conformers: Dolce
Database maintenance site:
Organism(s) covered:
All
Description:
Dolce is a database of DNA structure motifs based on an automatic classification method consisting o...
Inactive
CropPAL
Database maintenance site:
ANDS (Australian National Data Service), Edwards Group, University of Western Australia
Organism(s) covered:
Hordeum vulgare | Oryza sativa | Triticum aestivum | Zea mays
Description:
The compendium of crop Proteins with Annotated Locations (cropPAL) collates more than 550 data sets ...
Closed
Clinical Knowledgebase: JAX-CKB
Database maintenance site:
The Jackson Laboratory
Organism(s) covered:
Homo sapiens
Description:
The Jackson Laboratory Clinical Knowledgebase (CKB) is a semi-automated/manually curated database of...
Database maintenance site:
IRCCS (Istituto di Ricovero e Cura a Carattere Scientifico)
Organism(s) covered:
Homo sapiens
Description:
CLIMA 2 is the result of an integration effort aimed at including all certified STR profiles of huma...
Coral Trait Database
Database maintenance site:
Organism(s) covered:
Scleractinia
Description:
The Coral Trait Database is a growing compilation of scleractinian coral life history trait, phyloge...
Inactive
RNA Binding Protein Variant Database: RBP-Var
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
RBP-Var is a database of functional variants involved in regulation mediated by RNA-binding proteins...
Inactive
Whole-Cell Knowledge Base: WholeCellKB
Database maintenance site:
Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Mycoplasma genitalium
Description:
WholeCellKB is a collection of open-access model organism databases specifically designed to enable ...
Database maintenance site:
Department of Biochemistry, University of Cambridge, NCBS (National Center for Biological Sciences), Department of Crystallography, Birkbeck College, University of London
Organism(s) covered:
All
Description:
PASS2 contains alignments of structural motifs of protein superfamilies. PASS2 is an automatic versi...
Database maintenance site:
CALIPHO (Computer and Laboratory Investigation of Proteins of Human Origin Group, Swiss Institute of Bioinformatics), SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Homo sapiens
Description:
neXtProt is a comprehensive human-centric discovery platform, offering its users a seamless integrat...
Database maintenance site:
Theoretical Biology and Biophysics, T-10, Los Alamos National Laboratory
Organism(s) covered:
Nairovirus | Viruses | Zika virus
Description:
The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Databa...
Inactive
zfishbook
Database maintenance site:
Mayo Clinic
Organism(s) covered:
Danio rerio
Description:
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides...
Database maintenance site:
BIOTEC (The Biotechnology Center, Technische Universitat Dresden), EMBO (European Molecular Biology Organization), University of Copenhagen
Organism(s) covered:
All
Description:
STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemical...
Inactive
GENI-ACT
Database maintenance site:
MGAN (Microbial Genome Annotation Network)
Organism(s) covered:
Bacteria
Description:
GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial geno...
Inactive
MIPModDB: A Central Resource for the Superfamily of Major Intrinsic Proteins
Database maintenance site:
IIT Kanpur (Indian Institute of Technology Kanpur)
Organism(s) covered:
All
Description:
This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) fami...
Closed
DistiLD Database: Diseases and Traits in Linkage Disequilibrium Blocks: DistiLD
Database maintenance site:
Disease Systems Biology Group, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Organism(s) covered:
Homo sapiens
Description:
The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) r...
Inactive
The Pain and Interoception Imaging Network: PAIN
Database maintenance site:
Gail and Gerald Oppenheimer Center for Neurobiology of Stress at UCLA, University of California
Organism(s) covered:
Homo sapiens
Description:
The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scan...
Inactive
WholeCellSimDB
Database maintenance site:
Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Description:
WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researcher...
Closed
Digenic diseases database: DIDA
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed infor...
Suspend
ProteoRed
Database maintenance site:
CIMA (Centro de Investigacion Medica Aplicada)
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordinatio...
Closed
openSNP
Database maintenance site:
Seven Bridges, openSNP Administrators
Organism(s) covered:
Homo sapiens
Description:
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data,...
Inactive
Swedish Ocean Archive: SHARK
Database maintenance site:
SMHI (Swedish Meterological and Hydrological Institute)
Organism(s) covered:
All
Description:
SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data ...
Inactive
SICAS Medical Image Repository: SMIR
Database maintenance site:
Swiss Institute for Computer Assisted Surgery
Organism(s) covered:
Homo sapiens
Description:
The Sicas Medical Image Repository is a medical database for academic, scientific, technical and cli...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The Trace Archives includes the following archives: The Sequence Read Archive (SRA) stores raw seque...
Inactive
iSpyBio
Database maintenance site:
Organism(s) covered:
All
Description:
iSpyBio is an intelligent and unbiased search engine for Life scientists. It ranks reagents by the n...
Inactive
bNAber
Database maintenance site:
Ragon Institute, SBMRI, Sanford-Burnham Prebys Medical Discovery Institute, TSRI
Organism(s) covered:
Homo sapiens | Human immunodeficiency virus
Description:
The discovery of broadly neutralizing antibodies (bNAbs) has provided an enormous impetus to the HIV...
Database maintenance site:
The National Autonomous University of Mexico at the Center for Genomic Sciences, University of Mexico
Organism(s) covered:
Escherichia coli
Description:
RegulonDB is a model of the complex regulation of transcription initiation or regulatory network of ...
Database maintenance site:
Manchester Center for Integrative Systems Biology
Organism(s) covered:
Saccharomyces cerevisiae
Description:
This is a portal to the consensus yeast metabolic network as reconstructed from the genome sequence ...
Database maintenance site:
University of Athens
Organism(s) covered:
All
Description:
GpDB is a publicly accessible, relational database of G-proteins and their interactions with GPCRs a...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Vertebrata
Description:
The Vertebrate Genome Annotation (VEGA) database is a central repository for high quality manual ann...
Database maintenance site:
VSNU (Association of Universities in the Netherlands), DANS(Data Archiving and Networked Services)
Organism(s) covered:
Description:
NARCIS provides access to scientific information, including (open access) publications from the repo...
Database maintenance site:
Organism(s) covered:
Oryza
Description:
This website provides genome sequence from the Nipponbare subspecies of rice and annotation of the 1...
Database maintenance site:
Organism(s) covered:
Description:
dbMHC provides access to HLA sequences, tools to support genetic testing of HLA loci, HLA allele and...
Database maintenance site:
CBIIT (Center for Biomedical Informatics and Information Technology), CCNEs (Centers of Cancer Nanotechnology Excellence), NLC (Nanotechnology Characterization Laboratory), NIH (National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
caNanoLab is a data sharing portal designed to facilitate information sharing across the internation...
Closed
Streptococcus agalactiae NEM316 / Serotype III genome database: SagaList
Database maintenance site:
Organism(s) covered:
Description:
SagaList contains a database dedicated to the analysis of the genomes of the food-borne pathogen, St...
Closed
Photorhabdus luminescens genome database: PhotoList
Database maintenance site:
Organism(s) covered:
Description:
PhotoList, contains a database dedicated to the analysis of the genome of Photorhabdus luminescens. ...
Closed
Mycoplasma pulmonis genome database: MypuList
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from M. pulmonis,...
Closed
Listeria innocua and Listeria monocytogenes genomes database: ListiList
Database maintenance site:
Organism(s) covered:
Description:
ListiList is a database dedicated to the analysis of the genomes of the food-borne pathogen, Listeri...
Closed
Legionella pneumophila genome database: LegioList
Database maintenance site:
Organism(s) covered:
Description:
LegioList is a database dedicated to the analysis of the genomes of Legionella pneumophila strain Pa...
Closed
Colibri
Database maintenance site:
Organism(s) covered:
Description:
Its purpose is to collate and integrate various aspects of the genomic information from E. coli, the...
Closed
Buruli ulcer bacillus Database: BuruList
Database maintenance site:
Organism(s) covered:
Description:
A database dedicated to the analysis of the genome of Mycobacterium ulcerans, the Buruli ulcer bacil...
Inactive
STING
Database maintenance site:
Computational Biology Research Group , Embrapa/Informatica Agropecuaria
Organism(s) covered:
All
Description:
The Blue Star STING database stores information on the interactions between proteins and other bio m...
Database maintenance site:
Center for Medical Genetics, Keio University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
DPV provides information on germline pathogenic mutations in the Japanese population. The data of mu...