List of Database Records (records: 2186)
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Database maintenance site:
Organism(s) covered:
Canis | Homo sapiens | Mus musculus
Description:
The CardioVascular Research Grid (CVRG) project is creating an infrastructure for sharing cardiovasc...
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Organism(s) covered:
Homo sapiens
Description:
The goal of Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is to f...
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Organism(s) covered:
Description:
The database provides a means of investigating alternative splicing and can be used for identifying ...
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NCKU (National Cheng Kung University) Bioinformatics Center
Organism(s) covered:
Homo sapiens
Description:
The tumor-associated gene (TAG) database was designed to utilize information from well-characterized...
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National University of Singapore
Organism(s) covered:
Homo sapiens
Description:
A database for facilitating the search for drug adverse reaction target. DART contains information a...
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NLM (National Library of Medicine)
Organism(s) covered:
All
Description:
ChemIDplus is a web-based search system that provides access to structure and nomenclature authority...
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NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
PubMed Central (PMC) is the U.S. National Institutes of Health (NIH) digital archive of biomedical a...
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NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Eukaryota
Description:
The organelle genomes are part of the NCBI Reference Sequence (RefSeq) project that provides curated...
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NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Viruses
Description:
NCBI Viral Genomes Resource is a collection of virus genomic sequences that provides curated sequenc...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Influenza virus
Description:
Influenza Virus Resource presents data obtained from the NIAID Influenza Genome Sequencing Project a...
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NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
NCBI takes great care to ensure that the translation for each coding sequence (CDS) present in GenBa...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
AceView provides a curated, comprehensive and non-redundant sequence representation of all public mR...
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MMMP (Melanoma Molecular Map Project)
Organism(s) covered:
Homo sapiens
Description:
A collection of molecular interaction maps and pathways involved in cancer development and progressi...
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Organism(s) covered:
All
Description:
SUPERFAMILY is a database of structural and functional annotation for all proteins and genomes.
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MCPSB (Manitoba Centre for Proteomics and Systems Biology)
Organism(s) covered:
All
Description:
The Global Proteome Machine Database (gpmDB holds the minimum amount of information necessary for co...
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LBNL (Lawrence Berkeley National Laboratory)
Organism(s) covered:
All
Description:
A 16S rRNA gene database which provides chimera screening, standard alignment, and taxonomic classif...
Database maintenance site:
Krasnow Institute for Advanced Study, The National Academies of Sciences, Engineering, and Medicine
Organism(s) covered:
Metazoa
Description:
NeuroMorpho.Org is a centrally curated inventory of 3D digitally reconstructed neurons associated wi...
Database maintenance site:
Biological Sciences Research Group, Instituto Superior Técnico, Knowledge Discovery & Bioinformatics Research Group, Instituto Superior Técnico
Organism(s) covered:
Description:
YEASTRACT (Yeast Search for Transcriptional Regulators And Consensus Tracking) is a curated reposito...
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Kansas State University
Organism(s) covered:
Tribolium castaneum
Description:
BeetleBase is a community resource for Tribolium genetics, genomics and developmental biology. The d...
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DOE JGI (Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory)
Organism(s) covered:
Bacteria | Eukaryota | Fungi
Description:
The integrated microbial genomes (IMG) system is a data management, analysis and annotation platform...
Database maintenance site:
Infrafrontier Research Infrastructure, Infrafrontier Gmbh
Organism(s) covered:
Mus musculus
Description:
The European Mouse Mutant Archive (EMMA) is a non-profit repository for the collection, archiving (v...
Database maintenance site:
Iowa State University
Organism(s) covered:
Glycine max | Glycine soja
Description:
SoyBase, the USDA-ARS soybean genetic database, is a comprehensive repository for professionally cur...
Database maintenance site:
ISB (Institute for Systems Biology), Seattle Proteome Center
Organism(s) covered:
Apis | Bos taurus | Caenorhabditis elegans | Candida | Danio rerio | ...
Description:
The PeptideAtlas Project provides a publicly-accessible database of peptides identified in tandem ma...
Database maintenance site:
National Institute of Agrobiological Sciences, ProDom Team
Organism(s) covered:
Spodoptera frugiperda
Description:
SpodoBase is an integrated database for the genomics of the Lepidoptera Spodoptera frugiperda. It is...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
Daphnia | Daphnia magna | Daphnia pulex
Description:
wFleaBase includes data from all species of the genus, yet the primary species are Daphnia pulex and...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
Anopheles gambiae | Arabidopsis thaliana | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | ...
Description:
euGenes provides a common summary of gene and genomic information from eukaryotic organism databases...
Database maintenance site:
BioComputing laboratory, University of Padua
Organism(s) covered:
All
Description:
The Database of Protein Disorder (DisProt) is a curated database that provides information about int...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory), bioinsilico.org
Organism(s) covered:
All
Description:
ArchDB is a compilation of structural classifications of loops extracted from known protein structur...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory)
Organism(s) covered:
Gallus gallus | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
ABS is a database of Annotated regulatory Binding Sites from known binding sites identified in promo...
Database maintenance site:
IGBMC (Institut de Genetique et de Biologie Moleculaire et Cellulaire), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
All
Description:
BAliBASE; a benchmark alignment database, including enhancements for repeats, transmembrane sequence...
Database maintenance site:
ICGEB (International Centre Genetic Engineering and Biotechnology), Jedlik Laboratories: Bioinformatics, Faculty of Information Technology, Pázmány Péter Catholic University
Organism(s) covered:
All
Description:
The Protein Classification Benchmark Collection was created in order to create standard datasets on ...
Database maintenance site:
CNRS (The National Centre for Scientific Research), IBCP (Institut de Biologie et Chimie des Proteines, Centre National de la Recherche Scientifique), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
Hepatitis C virus
Description:
The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structu...
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FAIRDOM, HITS (Heidelberg Institute for Theoretical Studies)
Organism(s) covered:
All
Description:
SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and...
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Health Canada
Organism(s) covered:
Homo sapiens
Description:
The Health Canada Drug Product Database contains product specific information on drugs approved for ...
Database maintenance site:
Forsyth Institute
Organism(s) covered:
Bacteria | Fungi
Description:
The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the mo...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia, Wellcome Sanger Institute
Organism(s) covered:
Eukaryota | Leishmania | Leishmania major | Trypanosoma brucei | Trypanosoma cruzi | ...
Description:
TriTrypDB is one of the databases that can be accessed through the VEuPathDB portal, covering eukary...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Eukaryota | Trichomonas
Description:
TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; form...
Database maintenance site:
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Toxoplasma
Description:
ToxoDB is a free online resource that provides access to genomic and functional genomic data for Tox...
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Organism(s) covered:
Plasmodium
Description:
PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens ...
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Organism(s) covered:
Eukaryota | Giardia
Description:
A detailed study of Giardia lamblia's genome will provide insights into an early evolutionary stage ...
Database maintenance site:
Institute of Integrative Biology, University of Liverpool, The Wellcome Trust Centre for Molecular Parasitology, Wellcome Sanger Institute, Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Acanthamoeba | Aedes aegypti | Anncaliia | Anopheles gambiae | Babesia | ...
Description:
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic path...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Cryptosporidium
Description:
CryptoDB serves as the functional genomics database for Cryptosporidium and related species. CryptoD...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
SIDER contains information on marketed medicines and their recorded adverse drug reactions. The info...
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Organism(s) covered:
Description:
The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequenc...
Database maintenance site:
CRG (Comparative Genomics Group), ELIXIR, Wellcome Genome Campus, LMB (MRC Laboratory of Molecular Biology), EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Homo sapiens
Description:
The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of person...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), wwPDB, EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
All
Description:
The Chemical Component Dictionary is an external reference file describing all residue and small mol...
Database maintenance site:
Digital Science, Macmillan Publishers, Datacite
Organism(s) covered:
All
Description:
figshare is a generalist, subject-agnostic repository for many different types of digital objects th...
Database maintenance site:
CRG (Comparative Genomics Group)
Organism(s) covered:
All
Description:
PhylomeDB is a unique knowledge base providing public access to minable and browsable catalogues of ...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
Phaeodactylum tricornutum | Thalassiosira pseudonana
Description:
Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. ...
Database maintenance site:
AFMB (Laboratoire Architecture et Fonction des Macromolecules Biologiques), Université d'Aix-Marseille
Organism(s) covered:
All
Description:
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding ...