List of Database Records (records: 2186)
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Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires), SBI (The Structural Bioinformatics Laboratory)
Organism(s) covered:
Gallus gallus | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
ABS is a database of Annotated regulatory Binding Sites from known binding sites identified in promo...
Database maintenance site:
ICGEB (International Centre Genetic Engineering and Biotechnology), Jedlik Laboratories: Bioinformatics, Faculty of Information Technology, Pázmány Péter Catholic University
Organism(s) covered:
All
Description:
The Protein Classification Benchmark Collection was created in order to create standard datasets on ...
Database maintenance site:
CNRS (The National Centre for Scientific Research), IBCP (Institut de Biologie et Chimie des Proteines, Centre National de la Recherche Scientifique), LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
Hepatitis C virus
Description:
The euHCVdb is mainly oriented towards protein sequence, structure and function analyses and structu...
Database maintenance site:
FAIRDOM, HITS (Heidelberg Institute for Theoretical Studies)
Organism(s) covered:
All
Description:
SABIO-RK is a database for biochemical reactions, their kinetic equations with their parameters, and...
Database maintenance site:
Health Canada
Organism(s) covered:
Homo sapiens
Description:
The Health Canada Drug Product Database contains product specific information on drugs approved for ...
Database maintenance site:
Forsyth Institute
Organism(s) covered:
Bacteria | Fungi
Description:
The Human Oral Microbiome Database (HOMD) provides a site-specific comprehensive database for the mo...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia, Wellcome Sanger Institute
Organism(s) covered:
Eukaryota | Leishmania | Leishmania major | Trypanosoma brucei | Trypanosoma cruzi | ...
Description:
TriTrypDB is one of the databases that can be accessed through the VEuPathDB portal, covering eukary...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Eukaryota | Trichomonas
Description:
TrichDB is one of the databases that can be accessed through the EuPathDB (http://EuPathDB.org; form...
Database maintenance site:
Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Toxoplasma
Description:
ToxoDB is a free online resource that provides access to genomic and functional genomic data for Tox...
Database maintenance site:
Organism(s) covered:
Plasmodium
Description:
PlasmoDB is a genome database for the genus Plasmodium, a set of single-celled eukaryotic pathogens ...
Database maintenance site:
Organism(s) covered:
Eukaryota | Giardia
Description:
A detailed study of Giardia lamblia's genome will provide insights into an early evolutionary stage ...
Database maintenance site:
Institute of Integrative Biology, University of Liverpool, The Wellcome Trust Centre for Molecular Parasitology, Wellcome Sanger Institute, Bioinformatics Resource Centers, National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH)
Organism(s) covered:
Acanthamoeba | Aedes aegypti | Anncaliia | Anopheles gambiae | Babesia | ...
Description:
The Eukaryotic Pathogen, Vector and Host Informatics Resource (VEuPathDB) focuses on eukaryotic path...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia
Organism(s) covered:
Cryptosporidium
Description:
CryptoDB serves as the functional genomics database for Cryptosporidium and related species. CryptoD...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
SIDER contains information on marketed medicines and their recorded adverse drug reactions. The info...
Database maintenance site:
Organism(s) covered:
Description:
The EcoGene database contains updated information about the E. coli K-12 genome and proteome sequenc...
Database maintenance site:
CRG (Comparative Genomics Group), ELIXIR, Wellcome Genome Campus, LMB (MRC Laboratory of Molecular Biology), EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Homo sapiens
Description:
The European Genome-phenome Archive (EGA) is a service for permanent archiving and sharing of person...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), wwPDB, EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
All
Description:
The Chemical Component Dictionary is an external reference file describing all residue and small mol...
Database maintenance site:
Digital Science, Macmillan Publishers, Datacite
Organism(s) covered:
All
Description:
figshare is a generalist, subject-agnostic repository for many different types of digital objects th...
Database maintenance site:
CRG (Comparative Genomics Group)
Organism(s) covered:
All
Description:
PhylomeDB is a unique knowledge base providing public access to minable and browsable catalogues of ...
Database maintenance site:
LMGM (Laboratoire de Microbiologie et Genetique Moleculaires)
Organism(s) covered:
Phaeodactylum tricornutum | Thalassiosira pseudonana
Description:
Diatoms are photosynthetic unicellular eukaryotes that play an essential role in marine ecosystems. ...
Database maintenance site:
AFMB (Laboratoire Architecture et Fonction des Macromolecules Biologiques), Université d'Aix-Marseille
Organism(s) covered:
All
Description:
The CAZy database describes the families of structurally-related catalytic and carbohydrate-binding ...
Database maintenance site:
Organism(s) covered:
Description:
fireDB is a database of Protein Data Bank structures, ligands and annotated functional site residues...
Database maintenance site:
The CUCKOO Workgroup
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Saccharomyces cerevisiae | ...
Description:
This resource is a collection of all proteins identified to be localized on kinetochore, centrosome,...
Database maintenance site:
Charles University
Organism(s) covered:
Eukaryota | Viruses
Description:
The IRESite database presents information about experimentally studied IRES (Internal Ribosome Entry...
Database maintenance site:
CGSC (Coli Genetic Stock Center, Yale University)
Organism(s) covered:
Escherichia coli
Description:
The CGSC Database of E. coli genetic information includes genotypes and reference information for th...
Database maintenance site:
Centre for Arab Genomic Studies
Organism(s) covered:
Homo sapiens
Description:
The Centre for Arab Genomic Studies (CAGS) initiated the ambitious project to establish the CTGA (Ca...
Database maintenance site:
CBS (Centre de Biochimie Structurale)
Organism(s) covered:
All
Description:
The KNOTTIN database provides standardized data on the knottin structural family (also referred to a...
Database maintenance site:
Center for Applied Genomics
Organism(s) covered:
Homo sapiens
Description:
The Autism Chromosome Rearrangement Database is a collection of hand curated breakpoints and other g...
Database maintenance site:
Icahn School of Medicine at Mount Sinai, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Drosophila | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
PhosphoSite Plus provides extensive information on mammalian post-translational modifications (PTMs)...
Database maintenance site:
Organism(s) covered:
Description:
A small pathway portal for showcasing Cell Signaling Technology phospho-antibody products. Contains ...
Database maintenance site:
LBI Team (CEA)
Organism(s) covered:
Arabidopsis thaliana | Drosophila melanogaster | Escherichia coli | Helicobacter pylori | Homo sapiens | ...
Description:
InteroPorc is an automatic prediction tool to infer protein-protein interaction networks. It is appl...
Database maintenance site:
CCDC (Cambridge Crystallographic Data Centre)
Organism(s) covered:
All
Description:
Established in 1965, the Cambridge Structural Database (CSD) is the a repository for small-molecule ...
Database maintenance site:
Organism(s) covered:
Description:
CutDB is one of the first systematic efforts to build an easily accessible collection of documented ...
Database maintenance site:
Bulyk Laboratory, Brigham and Women's Hospital/ Harvard Medical School
Organism(s) covered:
Ashbya gossypii | Burkholderia pseudomallei K96243 | Burkholderia thailandensis E264 | Caenorhabditis elegans | Cryptosporidium parvum | ...
Description:
The UniPROBE (Universal PBM Resource for Oligonucleotide Binding Evaluation) database hosts data gen...
Database maintenance site:
Buck Institute for Research on Aging, NLM (National Library of Medicine)
Organism(s) covered:
Homo sapiens
Description:
The goal of MutDB is to annotate human variation data with protein structural information and other ...
Database maintenance site:
Human Microbiome Project, Broad Institute
Organism(s) covered:
Magnaporthe grisea
Description:
The Magnaporthe comparative genomics database provides accesses to multiple fungal genomes from the ...
Database maintenance site:
BC Cancer Agency
Organism(s) covered:
All
Description:
The Open REGulatory ANNOtation database (ORegAnno) is an open database for the curation of known reg...
Database maintenance site:
Department of Medical Informatics, Institute of Medical Biometry und Informatics, Heidelberg University, University of Tübingen
Organism(s) covered:
Homo sapiens
Description:
SYFPEITHI is a database comprising more than 7000 peptide sequences known to bind class I and class ...
Database maintenance site:
University of Dundee
Organism(s) covered:
All
Description:
SNAPPI-DB is an object-oriented database of domain-domain interactions observed in structural data. ...
Database maintenance site:
Biolead, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Mammalia
Description:
siRecords is a collection of a diverse range of mammalian RNAi experiments . After choosing a gene, ...
Database maintenance site:
Bioinformatics Resource Center, University of Wisconsin Biotechnology Center
Organism(s) covered:
Campylobacter | Chlamydiaceae | Haemophilus | Listeria | Mycoplasma | ...
Description:
The NMPDR provided curated annotations in an environment for comparative analysis of genomes and bio...
Database maintenance site:
Department of Bioinformatics and Biochemistry, Institute for Biochemistry and Biotechnology, Technical University Braunschweig, NGFN (National Genome Research Network), Project Management Julich
Organism(s) covered:
Archaea | Bacteria
Description:
PRODORIC is a comprehensive database about gene regulation and gene expression in prokaryotes. It in...
Database maintenance site:
Organism(s) covered:
All
Description:
APID Interactomes (Agile Protein Interactomes DataServer) provides information on the protein intera...
Database maintenance site:
Bioinformatics and Drug Design Group, Department of Pharmacy, National University of Singapore
Organism(s) covered:
Homo sapiens
Description:
The Therapeutically Relevant Multiple Pathways Database is designed to provide information about suc...
Database maintenance site:
BGEE administrators
Organism(s) covered:
Anolis carolinensis | Bos taurus | Branchiostoma lanceolatum | Caenorhabditis elegans | Canis lupus | ...
Description:
Bgee is a database for retrieval and comparison of gene expression patterns across multiple animal s...
Database maintenance site:
Organism(s) covered:
Description:
The YH database presents the entire DNA sequence of a Han Chinese individual, as a representative of...
Database maintenance site:
BGI (Beijing Genomics Institute)
Organism(s) covered:
Gallus gallus
Description:
The chicken Variation Database (ChickVD) is an integrated information system for storage, retrieval,...
Database maintenance site:
Organism(s) covered:
Oryza sativa L. Yssp. Indica | Oryza sativa L. ssp. japonica
Description:
In BGI-RIS, sequence contigs of Beijing indica and Syngenta japonica have been further assembled and...
Database maintenance site:
BC Cancer Agency
Organism(s) covered:
Caenorhabditis elegans | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The cisRED database holds conserved sequence motifs identified by genome scale motif discovery, simi...
Database maintenance site:
NIBSC (National Institute for Biological Standards and Control)
Organism(s) covered:
Homo sapiens
Description:
The UK Stem Cell Bank (UKSCB) facilitates the use and sharing of quality-controlled stem cell lines ...