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List of Database Records (records: 2182)
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Organism covered
Category
Operational Status
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Database maintenance site:
Yale University School of Medicine
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
ORDB began as a database of vertebrate OR genes and proteins and continues to support sequencing and...
Database maintenance site:
Washington University in St Louis School of Medicine
Organism(s) covered:
Saccharomyces cerevisiae
Description:
ScerTF is a database of position weight matrices (PWMs) for transcription factors in Saccharomyces s...
Database maintenance site:
Department of Molecular Biology, The Scripps Research Institute, Washington State University
Organism(s) covered:
Saccharomyces cerevisiae
Description:
The National Center for Research Resources' Yeast Resource Center is located at the University of Wa...
Database maintenance site:
Washington State University
Organism(s) covered:
Fragaria vesca | Malus domestica | Malus x domestica | Prunus mume | Prunus persica | ...
Description:
The Genome Database for Rosaceae (GDR) is a curated and integrated web-based relational database pro...
Database maintenance site:
United States Department of Health and Human Services, VectorBase
Organism(s) covered:
Aedes aegypti | Anopheles gambiae | Chelicerata | Culicidae | Diptera | ...
Description:
VectorBase is a web-accessible data repository for information about invertebrate vectors of human p...
Database maintenance site:
University of Wisconsin-Madison
Organism(s) covered:
All
Description:
ASAP is a relational database and web interface developed to store, update and distribute genome seq...
Database maintenance site:
Jurisica Lab, Ontario Cancer Institute
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The I2D (Interologous Interaction Database) is a database of known and predicted mammalian and eukar...
Database maintenance site:
University of Toronto
Organism(s) covered:
Escherichia coli
Description:
Bacteriome.org is a database integrating physical (protein-protein) and functional interactions with...
Database maintenance site:
University of Tartu
Organism(s) covered:
Eukaryota | Fungi
Description:
UNITE is a database and sequence management environment centered on the eukaryotic nuclear ribosomal...
Database maintenance site:
NCS (United Kingdom National Crystallography Service), University of Southampton
Organism(s) covered:
Description:
eCrystals is the archive for Crystal Structures generated by the Southampton Chemical Crystallograph...
Database maintenance site:
University of Nebraska Medical Center
Organism(s) covered:
All
Description:
The Antimicrobial Peptide Database (APD) contains information on antimicrobial peptides from across ...
Database maintenance site:
University of Leiden
Organism(s) covered:
Anopheles gambiae | Bacillus subtilis | Bombyx mori | Bordetella pertussis | Bos taurus | ...
Description:
PseudoBase is a collection of RNA pseudoknots that have been made available for retrieval to the sci...
Database maintenance site:
University of Helsinki
Organism(s) covered:
Homo sapiens
Description:
Clinical information about tumor samples and microarray data, with emphasis on array comparative gen...
Database maintenance site:
Georgetown University, Protein Information Resource Consortium, University of Delaware
Organism(s) covered:
All
Description:
The RESID Database of Protein Modifications is a comprehensive collection of annotations and structu...
Database maintenance site:
University of Cologne
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
VBASE2 is an integrative database of germ-line variable genes from the immunoglobulin loci of human ...
Database maintenance site:
University of California Santa Barbara
Organism(s) covered:
Metazoa | Viridiplantae
Description:
The Paleobiology Database seeks to provide researchers and the public with information about the ent...
Database maintenance site:
University of California Los Angeles
Organism(s) covered:
Mus musculus
Description:
Knockout mutant mice strains. The KOMP repository is a resource of mouse embryonic stem (ES) cells c...
Database maintenance site:
Institute for Genomics and Bioinformatics, University of California, Irvine, University of California Los Angeles
Organism(s) covered:
Description:
ChemDB is a chemical database containing nearly 5M commercially available small molecules, important...
Database maintenance site:
Cincinnati Children's Hospital Medical Center, University of Calgary
Organism(s) covered:
Xenopus | Xenopus laevis | Xenopus tropicalis
Description:
Xenbase is the model organism database for Xenopus laevis and X. (Silurana) tropicalis which was cre...
Database maintenance site:
Wishart Lab, University of Alberta
Organism(s) covered:
All
Description:
Toxin and Toxin Target Database (T3DB) is a bioinformatics resource that combines detailed toxin dat...
Database maintenance site:
University College London
Organism(s) covered:
All
Description:
The CATH database is a free, publicly available online resource that provides information on the evo...
Database maintenance site:
Universite de Geneve
Organism(s) covered:
Bacteria | Eukaryota | Vertebrata
Description:
OrthoDB presents a catalog of eukaryotic orthologous protein-coding genes. Orthology refers to the l...
Database maintenance site:
University of Maryland
Organism(s) covered:
Homo sapiens
Description:
Domain mapping of disease mutations (DMDM) is a database in which each disease mutation can be displ...
Database maintenance site:
Trinity College Dublin
Organism(s) covered:
All
Description:
The Enzyme Database was developed as a new way to access the data of the IUBMB Enzyme Nomenclature L...
Database maintenance site:
Naturalis Biodiversity Center
Organism(s) covered:
All
Description:
TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees...
Database maintenance site:
Toronto Hospital for Sick Children
Organism(s) covered:
All
Description:
iRefWeb is an interface to a relational database containing the latest build of the interaction Refe...
Database maintenance site:
Organism(s) covered:
Description:
Aspergillus Genomes is a resource for viewing annotated genes arising from various Aspergillus seque...
Database maintenance site:
NTP (National Toxicology Program, NIEHS, NIH)
Organism(s) covered:
All
Description:
The Chemical Effects in Biological Systems (CEBS) database houses data of interest to environmental ...
Database maintenance site:
University of California Los Angeles, University of Missouri, University of North Carolina, The Jackson Laboratory
Organism(s) covered:
Mus musculus
Description:
The MMRRC distributes and cryopreserves scientifically valuable, genetically engineered mouse strain...
Database maintenance site:
The Jackson Laboratory
Organism(s) covered:
Mus musculus
Description:
JAX Mice are the industry standard for animal model research, using precise genome solutions to bett...
Database maintenance site:
Frederick National Laboratory for Cancer Research, University of Arkansas for Medical Sciences
Organism(s) covered:
Canis lupus familiaris | Homo sapiens | Mus musculus
Description:
The Cancer Imaging Archive (TCIA) is a large archive of medical images of cancer accessible for publ...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The SWISS-MODEL Repository is a database of annotated 3D protein structure models generated by the S...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
HAMAP is a system, based on manual protein annotation, that identifies and semi-automatically annota...
Database maintenance site:
Thomas lab, University of Southern California
Organism(s) covered:
All
Description:
The PANTHER (Protein ANalysis THrough Evolutionary Relationships) Classification System is a unique ...
Database maintenance site:
SRI International
Organism(s) covered:
Homo sapiens
Description:
HumanCyc is a bioinformatics database that describes human metabolic pathways and the human genome. ...
Database maintenance site:
Brinkman Laboratory, Simon Fraser University
Organism(s) covered:
Bos taurus | Homo sapiens | Mammalia | Mus musculus
Description:
InnateDB has been developed to facilitate systems level investigations of the mammalian (human, mous...
Database maintenance site:
Organism(s) covered:
All
Description:
Peroxibase provides access to peroxidase sequences from all kingdoms of life, and provides a series ...
Database maintenance site:
Structural Bioinformatics and Network Biology Group
Organism(s) covered:
All
Description:
The database of 3D Interaction Domains (3did) is a collection of domain-domain interactions in prote...
Database maintenance site:
Organism(s) covered:
Description:
TargetTrack, a target registration database, provides information on the experimental progress and s...
Database maintenance site:
Organism(s) covered:
Description:
The Protein Data Bank archives information about the 3D shapes of proteins, nucleic acids, and compl...
Database maintenance site:
Rutgers, The State University of New Jersey
Organism(s) covered:
All
Description:
Ligand Expo is a data resource for finding information about small molecules bound to proteins and n...
Database maintenance site:
Royal Society of Chemistry
Organism(s) covered:
Description:
ChemSpider is a freely available collection of compound data from across the web, which aggregates c...
Database maintenance site:
Rothamsted Research
Organism(s) covered:
Viruses
Description:
DPVweb provides a central source of information about viruses, viroids and satellites of plants, fun...
Database maintenance site:
PRABI, Rhone-Alpes Bioinformatics Center
Organism(s) covered:
All
Description:
In English, PRIAM stands for enzyme-specific profiles for metabolic pathway prediction. PRIAM is a m...
Database maintenance site:
Georgetown University Medical Center, PIR, University of Delaware, EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
All
Description:
The PIR SuperFamily concept is being used as a guiding principle to provide comprehensive and non-ov...
Database maintenance site:
PBIL
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
HOGENOM is a phylogenomic database providing families of homologous genes and associated phylogeneti...
Database maintenance site:
Princeton University, Samuel Lunenfeld Research Institute, Mount Sinai Hospital, University of Edinburgh, University of Montreal
Organism(s) covered:
Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | Candida albicans | Drosophila melanogaster | ...
Description:
The Biological General Repository for Interaction Datasets (BioGRID) is a public database that archi...
Database maintenance site:
NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:
Homo sapiens
Description:
The NINDS Parkinson's Disease (PD) Biomarkers Program Data Management Resource enables web-based dat...
Database maintenance site:
CDC (Centers for Disease Control and Prevention), NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:
Homo sapiens
Description:
The Federal Interagency Traumatic Brain Injury Research (FITBIR) informatics system is an extensible...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
National Database for Autism Research (NDAR) is an extensible, scalable informatics platform for aus...