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List of Database Records (records: 2170)
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Database maintenance site:
Shanghai Jiao Tong University
Organism(s) covered:
Bacteria | Archaea
Description:
TADB is a database for Type 2 Toxin-antitoxin (TA) loci in Bacteria and Archaea. Sequence informatio...
Database maintenance site:
Forestry and Forest Products Research Institute
Organism(s) covered:
Cerambycidae | Disteniinae
Description:
This database is a collection about images based on specimens of Japanese longicorn beetles deposite...
Database maintenance site:
Charité - Universitätsmedizin Berlin
Organism(s) covered:
Homo sapiens
Description:
SuperSweet is a database for existing natural and artificial sweeteners, and also includes a homolog...
Database maintenance site:
RostLab, Technische Universität München
Organism(s) covered:
Homo sapiens | Arabidopsis Thaliana
Description:
LocDB is a database that collects experimental annotations for the subcellular localization of prote...
Database maintenance site:
Birkbeck College, University of London, Queen Mary University of London
Organism(s) covered:
Description:
PCDDB is a public repository that archives circular dichroism (CD) and synchrotron radiation CD (SRC...
Database maintenance site:
Iowa State University
Organism(s) covered:
Description:
ThYme is a database constructed to bring together amino acid sequences and 3D (tertiary) structures ...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Actinopterygii | Chondrichthyes | Crustacea | Rhodophyta | Chlorophyta | ...
Description:
MeRAM is a free, user-friendly software for ecological risk assessment/management of chemicals subst...
Database maintenance site:
omicX
Organism(s) covered:
Description:
OMICtools is a database that provides an overview of more than 20,000 software tools and databases r...
Database maintenance site:
Dynamique des Structures et Interactions des Macromolecules Biologiques, INSERM
Organism(s) covered:
Saccharomyces cerevisiae
Description:
MitoGenesisDB is a database focused on the dynamic of mitochondrial protein formation through global...
Database maintenance site:
MIT (Massachusetts Institute of Technology)
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
Isobase is a database of functionally related orthologs, which are termed "isologs", developed from ...
Database maintenance site:
Department of Physiology, Seoul National University College of Medicine & Department of Computer Engineering, College of Engineering, Myongji University
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
TRIP Database is a manually curated database of protein-protein interactions (PPI) for mammalian tra...
Database maintenance site:
Genomic Medicine Institute, Seoul National University College of Medicine
Organism(s) covered:
Homo sapiens
Description:
TIARA is a database containing personal genomic information obtained from next generation sequencing...
Database maintenance site:
Cornell University
Organism(s) covered:
Solanum lycopersicum | Solanum pennellii | Solanum habrochaites
Description:
TFGD is a comprehensive database of tomato functional genomics data. It contains gene expression dat...
Database maintenance site:
University of Massachusetts Medical School
Organism(s) covered:
Drosophila
Description:
FlyFactorSurvey is a database of DNA binding specificities for Drosophila transcription factors (TFs...
Database maintenance site:
Kyoto University
Organism(s) covered:
Acytostelium subglobosum
Description:
This database is a genome information database of a cellular slime mold, Acytostelium subglobosum. I...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
GRIPDB is a database of G protein Coupled Receptor (GPCR) oligomerization. It provides information o...
Database maintenance site:
Yamashina Institute for Ornithology
Organism(s) covered:
Aves
Description:
This database contains information of approximately 69,000 bird specimens (skins, spread wings, skel...
Database maintenance site:
EMDataResource
Organism(s) covered:
Description:
EMDB is a unified data resource for 3-Dimensional electron microscopy. It's a portal for deposition ...
Database maintenance site:
University of Missouri
Organism(s) covered:
Bos taurus
Description:
The Bovine Genome Database is a database that integrates bovine genome sequence with annotations of ...
Database maintenance site:
BC Cancer Agency's Genome Sciences Centre, McGill University
Organism(s) covered:
Homo sapiens
Description:
CEEHRC is a Canadian member of IHEC (http://integbio.jp/dbcatalog/en/record/nbdc01655), which aims t...
Database maintenance site:
McGill Epigenomics Data Coordination Centre, McGill Epigenomics Mapping Centre
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The IHEC Data Portal is a web resource to view, search and download epigenomics data released by the...
Database maintenance site:
KAUST (King Abdullah University of Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
DDPC is an integrated knowledgebase of genes experimentally verified to be involved in prostate canc...
Database maintenance site:
Academia Sinica
Organism(s) covered:
Homo sapiens
Description:
The dbDNV is a database about duplicated gene nucleotide variants (DNVs), which assist users to dist...
Database maintenance site:
NIH Roadmap Epigenomics Mapping Consortium
Organism(s) covered:
Homo sapiens
Description:
This is a portal site of Roadmap Epigenomics Project. The NIH Roadmap Epigenomics Mapping Consortium...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Description:
REFOLDdb is a database for the protein refolding methods, which based on published papers written ab...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Chironomidae
Description:
Chironomid DNA Barcode Database is a search system for DNA barcoding information on chironomid speci...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Eumetazoa | Embryophyta
Description:
JaLTER Data Catalog Search is a search system for ecological observation database managed by JaLTER ...
Database maintenance site:
NIES (National Institute for Environmental Studies)
Organism(s) covered:
Embryophyta
Description:
TroCEP provides information on tropical coastal ecosystems; world distribution maps, plant species l...
Database maintenance site:
North Carolina State University
Organism(s) covered:
Description:
Dryad is a repository for data files associated with published scientific and medical literature. Us...
Database maintenance site:
FAIRsharing
Organism(s) covered:
Description:
This site for FAIRsharing.org is a registry site intended to promote data-sharing in the sciences, s...
Database maintenance site:
U.S. Department of Health & Human Services
Organism(s) covered:
Description:
HealthData.gov is a repository of health data. It contains information about clinical care provider ...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Arabidopsis thaliana
Description:
The TF clone database provides the information of ORF clones (without STOP codons) of Arabidopsis tr...
Database maintenance site:
KANPHOS Platform Committee
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Caenorhabditis elegans
Description:
KANPHOS is a database for proteins that related to kinase-associated phospho-signaling systems in ne...
Database maintenance site:
Nagoya University, Graduate School of Information Science
Organism(s) covered:
Description:
The PSCDB contains information on the relationship between protein structural changes and ligand bin...
Database maintenance site:
Ehime University
Organism(s) covered:
Description:
ChemTHEATRE is a database to deposit and visualize monitoring data of environmental contaminants, es...
Database maintenance site:
The University of Tokyo The University Museum
Organism(s) covered:
Moniliformopses
Description:
Flora of Nepal Database (Ferns and its allies) is a database of specimens of pteridophytes in Nepal ...
Database maintenance site:
Department of Molecular Genetics, University of Toronto
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans
Description:
RBPDB is a collection of RNA-binding proteins linked to a curated database of published observations...
Database maintenance site:
University of Delaware, Georgetown University Medical Center
Organism(s) covered:
Homo sapiens | Mus musculus | Escherichia coli
Description:
PRO provides an ontological representation of protein-related entities by unambiguously defining the...
Database maintenance site:
Department of Computational and Data Science, Indian Institute of Science
Organism(s) covered:
Bacteria | Archaea
Description:
WebGeSTer DB is a database of intrinsic transcription terminators, and comprises of >2,200,000 termi...
Database maintenance site:
Korean BioInformation Center
Organism(s) covered:
Homo sapiens
Description:
VnD is a integrated database of the trilateral relationship among genomic variations, human diseases...
Database maintenance site:
Division of Computational Systems Biology, University of Vienna
Organism(s) covered:
Bacteria
Description:
The Effective is a database for bioinformatic identification of eukaryotic-like domains that is perf...
Database maintenance site:
Center for Informational Biology, Ochanomizu University
Organism(s) covered:
Embryophyta
Description:
RESOPS is a database for analyzing the correspondence of RNA editing sites to protein 3D structures....
Database maintenance site:
The Royal Liverpool and NHS Broadgreen Hospitals, University of Liverpool
Organism(s) covered:
Homo sapiens
Description:
AFND is a public database containing frequency information of several immune genes such as Human Leu...
Database maintenance site:
The CUCKOO Workgroup
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Cavia porcellus | Plasmodium falciparum | ...
Description:
CPLA is a compendium database for lysine acetylated substrates. It contains 3,311 unique protein ent...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Mammalia
Description:
The RIKEN integrated database of mammals collects data from large-scale programs using mammals in RI...
Database maintenance site:
EuPathDB Project Team
Organism(s) covered:
Anncaliia algerae | Edhazardia aedis | Encephalitozoon cuniculi | Encephalitozoon hellem | Encephalitozoon intestinalis | ...
Description:
MicrosporidiaDB is a functional genomic database serving the microsporidia research communities. Mic...
Database maintenance site:
SickKids (The Hospital for Sick Children)
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
DAnCER is a database which integrates information on genes with chromatin modification (CM) function...
Database maintenance site:
University of Southampton
Organism(s) covered:
Homo sapiens
Description:
DBASS is a comprehensive repository of new exon boundaries that were induced by pathogenic mutations...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
KERO is a database that integrates single nucleotide variations, epigenomic data (histone modificati...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
This site contains educational resources about PDBj. It is written to help a lay audience understand...