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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
BIOBIX (Lab of bioinformatics and computational genomics)
Organism(s) covered:
Description:
sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profil...
Database maintenance site:
ANDS (Australian National Data Service), eResearch Centre, Monash University
Organism(s) covered:
Description:
This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) o...
Database maintenance site:
Karr Lab, Institute for Multiscale Biology & Genomics
Organism(s) covered:
Description:
WholeCellSimDB is a database of whole-cell model simulations designed to make it easy for researcher...
Database maintenance site:
BioVeL, Encyclopedia of Life, Natural History Museum, Pensoft Publishers, BHL (The Biodiversity Heritage Library), ViBRANT (Virtual Biodiversity Research and Access Network for Taxonomy), Vizzuality, e-monocot project
Organism(s) covered:
All
Description:
Scratchpads are an online virtual research environment for biodiversity for the sharing of data and ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
DIDA (DIgenic diseases DAtabase) is a novel database that provides for the first time detailed infor...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining ...
Database maintenance site:
Bioinformatics and Computational biology Unit, Molecular genetics Lab, University of Rome Tor Vergata
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling i...
Database maintenance site:
University of Rome Tor Vergata
Organism(s) covered:
Viruses
Description:
VirusMentha is a collection of viral interactions manually curated from protein-protein databases th...
Database maintenance site:
Organism(s) covered:
All
Description:
iDigBio is the US national resource for digitized information about vouchered natural history collec...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, me...
Database maintenance site:
CIMA (Centro de Investigacion Medica Aplicada)
Organism(s) covered:
Archaea | Bacteria | Eukaryota
Description:
Carlos III Networked Proteomics Platform, ProteoRed-ISCIII is a National Network for the coordinatio...
Database maintenance site:
Seven Bridges, openSNP Administrators
Organism(s) covered:
Homo sapiens
Description:
A crowdsourced collection of personal genomics data. Includes SNP genotyping, exome sequencing data,...
Database maintenance site:
Beth Israel Deaconess Medical Center, Boston Children's Hospital, Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School, Dana-Farber Cancer Institute, Harvard Medical School, Massachusetts General Hospital, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The PlasmID Repository provides researchers with inexpensive sequencing and plasmid services, holdin...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
NDCT is an informatics platform for the sharing of clinical trial data funded by the National Instit...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
RDoCdb is an informatics platform for the sharing of human subjects data related to Mental Health re...
Database maintenance site:
University of Indiana
Organism(s) covered:
All
Description:
A world bioinformatic public service for high-speed access to up-to-date DNA & protein biological se...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The NCBI BioSample database stores submitter-supplied descriptive information, or metadata, about th...
Database maintenance site:
The Institute for Quantitative Social Service, Harvard University, Harvard Medical School, SBGrid Consortium
Organism(s) covered:
All
Description:
The Structural Biology Data Grid (SBGrid-DG) community-driven repository to preserve primary experim...
Database maintenance site:
Organism(s) covered:
All
Description:
The Metabolomics Workbench serves as a national and international repository for metabolomics data a...
Database maintenance site:
University of Illinois at Chicago
Organism(s) covered:
All
Description:
MoonProt Database is a manually curated, searchable, internet-based resource with information about ...
Database maintenance site:
LONI (Laboratory of Neuro Imaging, University of Southern California)
Organism(s) covered:
Homo sapiens
Description:
PPMI is an observational clinical study to verify progression markers in Parkinson's disease. The st...
Database maintenance site:
University of Oxford, University of Minnesota, Washington University in St Louis, Radboud University
Organism(s) covered:
Homo sapiens
Description:
The Human Connectome Project (HCP) houses and distributes public connectome study data for a series ...
Database maintenance site:
UCSD (University of California San Diego)
Organism(s) covered:
Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description:
The NIDDK Information Network provides access to large pools of data relevant to the mission of NIDD...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK...
Database maintenance site:
Beth Israel Deaconess Medical Center, LCP (Laboratory for Computational Physiology, Massachusetts Institute of Technology), Philips Healthcare
Organism(s) covered:
Homo sapiens
Description:
MIMIC-III (Medical Information Mart for Intensive Care III) is a large, freely-available database co...
Database maintenance site:
Harvard Stem Cell Institute, Oxford e-Research Centre, Department of Engineering Science, University of Oxford
Organism(s) covered:
Danio rerio | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The Stem Cell Commons were initiated by the Harvard Stem Cell Institute to develop a community for s...
Database maintenance site:
transPLANT (trans-national infrastructure for plant genomic science), IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:
Viridiplantae
Description:
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German...
Database maintenance site:
Centre sur la Biodiversite de l'Universite de Montreal
Organism(s) covered:
All
Description:
Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical i...
Database maintenance site:
CRIA (The Reference Center on Environmental Information)
Organism(s) covered:
All
Description:
speciesLink (also known as the Distributed Information System for Biological Collections: Integratin...
Database maintenance site:
SMHI (Swedish Meterological and Hydrological Institute)
Organism(s) covered:
All
Description:
SHARK ("Svenskt HavsARKiv" / "Swedish Ocean Archive") contains marine environmental monitoring data ...
Database maintenance site:
MNHN (Muséum National d'Histoire Naturelle)
Organism(s) covered:
Fulgoroidea | Fulgoromorpha | Hemiptera | Insecta
Description:
Fulgoromorpha Lists On the Web (FLOW) is an online database that aims to provide an easy-access summ...
Database maintenance site:
MVZ (Museum of Vertebrate Zoology at Berkeley), University of Colorado Boulder
Organism(s) covered:
All
Description:
VertNet is a NSF-funded collaborative project that makes biodiversity data free and available on the...
Database maintenance site:
INI (The USC Mark and Mary Stevens Neuroimaging and Informatics Institute, University of Southern California)
Organism(s) covered:
Homo sapiens
Description:
The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The immune tolerance data management and visualization portal for studies sponsored by the Immune To...
Database maintenance site:
CEDAR (Center for Expanded Data Annotation and Retrieval), Human Immunology Project Consortium, ISA-Tools, University of Oxford, Northrop Grumman Health IT, Stanford University, Technion - Israel Institute of Technology, University at Buffalo, University of California San Francisco, AMP (Accelerating Medicines Partnership)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The Immunology Database and Analysis Portal (ImmPort) data repository was created for the exploratio...
Database maintenance site:
MGI (Mouse Genome Informatics)
Organism(s) covered:
Mus musculus
Description:
The Gene Expression Database (GXD) is a community resource for gene expression information from the ...
Database maintenance site:
Swiss Institute for Computer Assisted Surgery
Organism(s) covered:
Homo sapiens
Description:
The Sicas Medical Image Repository is a medical database for academic, scientific, technical and cli...
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Felis catus | Homo sapiens | Macaca mulatta | ...
Description:
Open Connectome Project: Reverse Engineering the Brain One Synapse at a Time
Database maintenance site:
University of Michigan
Organism(s) covered:
Archaea | Bacteria
Description:
The ribosomal RNA operon copy number database is a publicly available, curated resource for ribosoma...
Database maintenance site:
COS (Center for Open Science)
Organism(s) covered:
All
Description:
The Open Science Framework (OSF) is a free and open free, open repository and platform to enable col...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
DEPOD - the human DEPhOsphorylation Database is a manually curated database collecting human active ...
Database maintenance site:
BioComputing laboratory, University of Padua, Institue of Molecular Biology, gGmbH, Structural Bioinformatics and Molecular Modelling Group, CRBM
Organism(s) covered:
All
Description:
RepeatsDB (http://repeatsdb.bio.unipd.it/) is a database of annotated tandem repeat protein structur...
Database maintenance site:
University of Padova
Organism(s) covered:
All
Description:
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various so...
Database maintenance site:
LINK-group, NetBiol, Semmelweis University
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Saccharomyces cerevisiae
Description:
The compartmentalized protein-protein interaction database (ComPPI), provides qualitative informatio...
Database maintenance site:
CPqRR (Fiocruz Minas Centro de Pesquisas Rene Rachou), St Vincent's Institute, Department of Biochemistry, University of Cambridge
Organism(s) covered:
All
Description:
Platinum is a manually curated, literature-derived database comprising over 1,000 mutations which fo...
Database maintenance site:
University of Warsaw
Organism(s) covered:
All
Description:
KnotProt collects information about proteins with knots or slipknots. The knotting complexity of pro...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
euL1db, the European database of L1-HS retrotransposon insertions in humans, provides a curated and ...
Database maintenance site:
Organism(s) covered:
Description:
Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the large...
Database maintenance site:
Baylor College of Medicine
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The mission of NURSA is to accrue, develop, and communicate information that advances our understand...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Open Source Brain is a resource for sharing and collaboratively developing computational models of n...