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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Striga hermonthica
Description:
This database is a catalog of Striga hermonthica ESTs. It contains EST information which annotated u...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
IRView is a database and viewer of interacting regions (IRs) in protein sequences. It contains 3,417...
Database maintenance site:
Osaka University
Organism(s) covered:
Homo sapiens | Rattus | Mus musculus | Oryctolagus cuniculus | Escherichia coli
Description:
Ig-Base is a collection of antibody data compiled from Protein Data Bank with associated annotations...
Database maintenance site:
IDEAL Development Team
Organism(s) covered:
Homo sapiens | Saccharomyces cerevisiae | Mus musculus | Xenopus laevis | Rattus norvegicus | ...
Description:
This is a collection of knowledge on experimentally verified intrinsically disordered proteins. It c...
Database maintenance site:
HUPO (Human Proteom Organization)
Organism(s) covered:
Homo sapiens | Rattus
Description:
This database is a portal site about an international project, Human Kidney and Urine Proteome Proje...
Database maintenance site:
Bioinformatics Center, Kyoto University
Organism(s) covered:
Description:
CaMPDB is a database of calpain, a calcium-dependent protease as well as one of the most typical enz...
Database maintenance site:
Hokkaido University
Organism(s) covered:
Apicomplexa
Description:
The DB-AT is a database composed of full-length cDNA datasets and RNA-seq datasets of several Parasi...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Drosophila melanogaster
Description:
FLYBRAIN Neuron Database is a integrated database about a central brain of Drosophila melanogaster. ...
Database maintenance site:
Flybrain Database consortium
Organism(s) covered:
Drosophila melanogaster
Description:
Flybrain is an anatomical database of the central and peripheral nervous system of Drosophila melano...
Database maintenance site:
Meiji pharmaceutical university
Organism(s) covered:
Homo sapiens
Description:
This is a database of structural changes on alpha-galactosidase A (GLA) responsible for Fabry diseas...
Database maintenance site:
University of Fukui, Faculty of Medical Sciences
Organism(s) covered:
Homo sapiens | Rattus
Description:
ED-genes is a database for endocrine disrupter-sensitive genes in reproductive system. It contains i...
Database maintenance site:
The Dynamic Brain Platform committee
Organism(s) covered:
Description:
Dynamic Brain Platform is an integrated site which provides scientists, academics and other practiti...
Database maintenance site:
Tokyo Institute of Technology School of Life Science and Technology
Organism(s) covered:
Description:
DTA DATABASE collects results of DTA (Dihedral Transition Analysis) from comprehensive and non-redun...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Streptomyces coelicolor | Streptomyces griseus | Streptomyces peucetius | Streptomyces albogriseolus | Streptomyces venezuelae | ...
Description:
DBSCR is a database for transcriptional regulation events in Streptomyces coelicolor A3(2) and its c...
Database maintenance site:
Keio University
Organism(s) covered:
Caenorhabditis elegans
Description:
This site is a database about synaptic connectivity of C. elegans. It contains figures and tables ab...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Description:
Cerebellar Platform is an integrated database for cerebellar research. This database contains mini-r...
Database maintenance site:
CEOP Tsukuba Reference Site Project
Organism(s) covered:
Description:
CTRS is a portal site for the archiving hydrometeorological data observed by the multiple institutes...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Manihot esculenta | Ricinus communis | Populus trichocarpa | Vitis vinifera | Arabidopsis thaliana
Description:
The Cassava Online Archive is a database about cassava mRNA sequences and ESTs currently available f...
Database maintenance site:
Keio University
Organism(s) covered:
Description:
CancerProView is an image database for cancer-associated protein (domains) and their interaction pat...
Database maintenance site:
Institut de Biologie du Développement de Marseille
Organism(s) covered:
Botryllus schlosseri | Ciona intestinalis | Ciona savignyi | Halocynthia aurantium | Halocynthia roretzi | ...
Description:
ANISEED is a database about gene expression in Ascidian embryos. It contains detailed anatomical ont...
Database maintenance site:
Kyushu University Faculty of Agriculture
Organism(s) covered:
Hexapoda
Description:
AIIC is a portal site of databases about types and normal specimens collected in Asia and the Pacifi...
Database maintenance site:
Center for iPS Cell Research and Application, Kyoto University
Organism(s) covered:
Homo sapiens
Description:
SHOGoin is a database about differentiated and stem cells in humans. Each entry contains information...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
KEGG Metagenomes is a database about environmental samples with which metagenome sequences are deter...
Database maintenance site:
Kyoto University Institute for Chemical Research Bioinformatics Center
Organism(s) covered:
Description:
KEGG MODULE is a database of manually defined functional units called KEGG modules identified by M n...
Database maintenance site:
Division of Systems Medical Science, Institute for Comprehensive Medical Science, Fujita Health University
Organism(s) covered:
Mus musculus
Description:
The Mouse Phenotype Database is for raw data of behavioral tests from mouse strains. Data were colle...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Oryzias latipes
Description:
The Medaka Methylome Browser database gathers kowledge about methylomes of medaka genomes with Illum...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Caenorhabditis elegans
Description:
WormTSS is a comprehensive collection of transcription start sites (TSSs) for trans-spliced genes in...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Description:
GGGenome is an ultrafast search engine for nucleotide sequences. It allows searches for sequences co...
Database maintenance site:
NLM (National Library of Medicine)
Organism(s) covered:
Homo sapiens
Description:
ClinicalTrials.gov is a results database of publicly and privately supported clinical studies of hum...
Database maintenance site:
Orphanet
Organism(s) covered:
Homo sapiens
Description:
Orphanet is a portal site for rare diseases and orphan drugs. It provides inventory of rare diseases...
Database maintenance site:
Japan Hand Search & Electronic Search Society
Organism(s) covered:
Homo sapiens
Description:
This database provides evidence reports by publications about Kampo Treatment, Japanese Acupuncture ...
Database maintenance site:
NIHS (National Institute of Health Sciences)
Organism(s) covered:
Homo sapiens | Rattus norvegicus | Mus musculus
Description:
Percellome Database is a toxic genomics database that provides experimental data on gene expression ...
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Norovirus | Sapovirus | Vesivirus | Lagovirus | Small round structured virus | ...
Description:
This database provides gene information and literature information about GatVirus. Users can specify...
Database maintenance site:
Tokyo Women's Medical University, Maternal and Perinatal Center
Organism(s) covered:
Homo sapiens
Description:
This site is a database for the morbidity and the mortality of VLBW infants in Japan. It provides da...
Database maintenance site:
Kyoto University
Organism(s) covered:
Homo sapiens
Description:
The DDIDA database provides mechanism-based information about drugs, micromolecules and body phenoty...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza sativa
Description:
FiT-DB is a database for gene expression and statistical modeling of transcriptomic dynamics in fiel...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Hordeum vulgare
Description:
Bex-db is a database of a malting barley (Haruna Nijo, two-rowed) transcriptome data. It includes se...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Oryza glaberrima
Description:
AfRicA DB is a database for genome annotation of O. glaberrima. It provides various kinds of informa...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Arabidopsis thaliana | Oryza sativa | Sorghum bicolor | Zea mays
Description:
PGF-DB is a database for analysis of gene families from Oryza sativa, Sorghum bicolor, Zea mays, and...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Triticum aestivum
Description:
Komugi GSP is a genome analysis program for wheat in Japan. This database includes the data of genom...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Glycine max
Description:
DAIZUbase is an integrated soybean genome database and data mining tools; 2 map browsers (GBrowse, U...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Viridiplantae
Description:
This database is an annotation pipeline for flowering plant genomes. If users submit a DNA sequence,...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Raphanus sativus
Description:
Raphanus sativus Genome DataBase is a database of DNA markers of Raphanus sativus. It contains infor...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Dianthus caryophyllus
Description:
This is a database for the Dianthus caryophyllus (carnation) genome information. The sequence data f...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Stramenopiles | Cyanobacteria | Cryptophyta | Chlorophyta
Description:
KNApSAcK Bicycle is a database on proteins and metabolism reaction of algae. It contains information...
Database maintenance site:
University of Toyama Institute of Natural Medicine
Organism(s) covered:
Description:
TradMPD is a database of traditional medical and pharmaceutical drugs. It collects information on cr...
Database maintenance site:
Kyoto University
Organism(s) covered:
Homo sapiens
Description:
HGVD is a database providing a central resource to archive and display Japanese genetic variation an...
Database maintenance site:
NITE (National Institute of Technology and Evaluation)
Organism(s) covered:
Bacteria | Archaea
Description:
MiFuP is a database of functional potentials deduced from microbial genomes. Users can easily search...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
FANTOM5 is a database about comprehensive expression profiles and functional annotation of mammalian...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Description:
AgrID is a portal site for genome information for crops and livestock. AgrID links to websites of ge...