Database Record
Melonet DB
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01689 | ||||||||
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| Database nameName of the database | Melonet DB | ||||||||
| Alternative nameAlternative name of the database | ― | ||||||||
| URLURL of the database | https://melonet-db.dna.affrc.go.jp/ap/top | ||||||||
| Database maintenance siteSite maintaining the database | University of Tsukuba Graduate School of Life and Environmental Sciences (Link to J-Global) | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||||||
| Database descriptionDatabase descirption | Melonet DB is a database about whole gene expression in muskmelon (Cucumis melo L.). It contains expression patterns of whole gene in 30 different tissues of "Earl's favorite Harukei-3 (Harukei-3)" melon, and provides following tools: (1) Gene expression map viewer is designed to analyze tissue-specific gene expression pattern in 30 different tissues. (2) Coexpression viewer is designed to analyze coexpression relationship between genes. (3) Mutation analysis tools are aimed at to analyze whether nucleotide change(s) cause amino acid substitution, frame shift, or splicing variation within gene. (4) Sequence analysis tools are designed to analyze DNA sequence. Blast or "oligo DNA mapper" identify homologous genes or genomic positions, respectively, based on query sequence. (5) Primer design tools are designed to analyze primer sequence and find the best possible unique PCR primer pair based on target query sequence. | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Cucumis melo (3656) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||
| Operational statusOperational status for the database | Active | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | https://melonet-db.dna.affrc.go.jp/ap/dnl | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2018-02-06 | ||||||||
| Last update date of this recordLast update date of this English record | 2020-10-04 | ||||||||
| Record license | Creative Commons CC0 license |