Database Record
Codon Usage Database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00033 | ||||
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| Database nameName of the database | Codon Usage Database | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | http://www.kazusa.or.jp/codon/ | ||||
| Database maintenance siteSite maintaining the database | Kazusa DNA Research Institute (Link to J-Global) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||
| Database descriptionDatabase descirption | The Codon Usage Database is an extended web-based version of CUTG (Codon Usage Tabulated from GenBank) and is used for exploration of codon usage within various organisms, chloroplast, and mitochondria. The database captures data from the NCBI-GenBank for 3,027,973 complete protein coding genes from 35,799 organisms. Users can search the database by organism with data expressed in tabular form: codon, frequency per 1000, number. In addition, the table can be modified to include the amino acid encoded by the codon. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Bacteria (2), Eukaryota (2759), Viruses (10239) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ftp://ftp.kazusa.or.jp/pub/codon/current/ | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ftp://ftp.kazusa.or.jp/pub/codon/current/README | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2015-07-09 | ||||
| Record license | Creative Commons CC0 license |