Database Record
Database of Genomic Variants: A curated catalogue of structural variation in the human genome
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00037 | ||||||||
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| Database nameName of the database | Database of Genomic Variants | ||||||||
| Alternative nameAlternative name of the database | A curated catalogue of structural variation in the human genome | ||||||||
| URLURL of the database | http://dgv.tcag.ca/ | ||||||||
| Database maintenance siteSite maintaining the database | The Centre for Applied Genomics | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Canada | ||||||||
| Database descriptionDatabase descirption | Database of Genomic Variants is a repository that provides information about variations in structure in the human genome. The database offers information on genomic changes in DNA segments larger than 1kb as well as annotated insertion/deletion variations in a range of 100bp to 1kb. Only healthy samples were studied, which makes the results very useful to apply as controls in future related studies. The collection contains 101,923 entries. The number of CNVs identified is 6,6741 and inversions are 953. There were 34,229 InDels in the 100bp to 1kb range. Data concerning whole chromosomes can be retrieved. Keyword and Blast search options are also provided. | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||
| Operational statusOperational status for the database | Active | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | http://dgv.tcag.ca/dgv/app/downloads | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||||||
| Last update date of this recordLast update date of this English record | 2015-06-04 | ||||||||
| Record license | Creative Commons CC0 license |