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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
Huazhong University of Science and Technology, UTHealth (University of Texas Health Science Center at Houston)
Organism(s) covered:
Homo sapiens
Description:
Pancan-meQTL is a database for systematically prediction about the effects of SNPs on methylation le...
Database maintenance site:
Université de Sherbrooke
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Pan troglodytes | Danio rerio | ...
Description:
OpenProt is a database that enforces a polycistronic model of eukaryotic genome annotations. It anno...
Database maintenance site:
Peking University Cancer Hospital and Institute, Chinese Academy of Sciences, University of Michigan
Organism(s) covered:
Homo sapiens
Description:
OncoBase is an integrated database for annotating somatic mutations from more than 120 cancer projec...
Database maintenance site:
BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Candida albicans | Danio rerio | Drosophila melanogaster | ...
Description:
NucMap is a database about genome-wide nucleosome positioning map of organisms. The nucleosome posit...
Database maintenance site:
Cancer Science Institute of Singapore
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
MethMotif is an integrative database of transcription factor binding motifs coupled with DNA methyla...
Database maintenance site:
SBCB Unit, Department of Biochemistry, University of Oxford
Organism(s) covered:
All
Description:
MemProtMD is a database about intrinsic membrane protein structures derived from Protein Data Bank, ...
Database maintenance site:
Computational Epigenomics Lab, Evolutionary Genomics and Bioinformatics Group, Dept. of Genetics, Inst. of Biotechnology, University of Granada
Organism(s) covered:
Homo sapiens
Description:
LipDB is a database about small RNA sequencing profiles in liquid biopsy studies. All data in this d...
Database maintenance site:
Icahn School of Medicine at Mount Sinai
Organism(s) covered:
All
Description:
KinaMetrix is a database to investigate kinase conformations and inhibitor space. It contains the ge...
Database maintenance site:
National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:
Canidae
Description:
iDog is an integrated resource for domestic dog (Canis lupus familiaris) and wild canids. It include...
Database maintenance site:
University of Bari
Organism(s) covered:
Homo sapiens
Description:
HmtVar is a manually-curated database for variability and pathogenicity information about human mtDN...
Database maintenance site:
Vanderbilt University Medical Center
Organism(s) covered:
Homo sapiens
Description:
HACER is a database of human active enhancer to interpret regulatory variants, which includes active...
Database maintenance site:
Chinese Academy of Sciences
Organism(s) covered:
Bacteria | Archaea
Description:
gcMeta is an integrated platform for microbiome research. It contains information and data about mic...
Database maintenance site:
UTHealth (University of Texas Health Science Center at Houston)
Organism(s) covered:
Homo sapiens
Description:
FusionGDB is a database about fusion gene annotation. This database collects data of clinically rele...
Database maintenance site:
Harbin Medical University
Organism(s) covered:
Homo sapiens
Description:
EWASdb is a comprehensive database for epigenome-wide association studies (EWAS). Users can search s...
Database maintenance site:
National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:
Homo sapiens
Description:
EWAS Atlas is an integrated database focusing on DNA methylation which is one of the key epigenetic ...
Database maintenance site:
College of Life Science and Technology, HUST
Organism(s) covered:
Homo sapiens
Description:
EVmiRNA is a comprehensive database of miRNA in extracellular vesicles. It provides miRNA expression...
Database maintenance site:
The Encyclopedia of Traditional Chinese Medicine
Organism(s) covered:
Embryophyta
Description:
ETCM is a comprehensive database for the commonly used herbs and traditional Chinese medicines (TCMs...
Database maintenance site:
School of Life Sciences, The Chinese University of Hong Kong
Organism(s) covered:
Eukaryota
Description:
ENPD is a database for nucleic acid binding proteins (NBPs) and their functional information. It con...
Database maintenance site:
CCB (VIB-KU Leuven Center for Cancer Biology)
Organism(s) covered:
Homo sapiens | Mus musculus | Danio rerio | Rattus norvegicus | Bos taurus | ...
Description:
EndoDB is an expert curated added-value database of publicly available endothelial (single) cell gen...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Bombyx mori
Description:
This is a collection of tissue specific transcriptomic data for Bombyx mori. RNAseq was applied for ...
Database maintenance site:
NINDS (National Institute of Neurological Disorders & Stroke)
Organism(s) covered:
All
Description:
EncoMPASS is a database for relating integral membrane proteins from the points of view of their seq...
Database maintenance site:
National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:
Homo sapiens | Viruses
Description:
EDK is a curated knowledgebase of associations between abnormal RNA modifications and human diseases...
Database maintenance site:
Arieh Warshel Institute of Computational Biology, The Chinese University of Hong Kong
Organism(s) covered:
Archaea | Bacteria | Fungi | Embryophyta | Homo sapiens | ...
Description:
dbAMP is a database of anti-microbial peptides (AMPs) which are naturally encoded by genes and gener...
Database maintenance site:
BGI (Beijing Genomics Institute)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
DSMNC is a comprehensive catalogue of somatic single nucleotide variations (SNVs) occurring in a nor...
Database maintenance site:
Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Sus scrofa | Oryctolagus cuniculus | ...
Description:
CRISPRlnc is a manually curated database of validated CRISPR/Cas9 sgRNAs for lncRNAs. The ID, positi...
Database maintenance site:
University of Lausanne
Organism(s) covered:
Euteleostomi
Description:
CoevDB is a database of intramolecular coevolution among over 8,000 protein-coding genes of the bony...
Database maintenance site:
National University of Singapore
Organism(s) covered:
Viridiplantae | Homo sapiens
Description:
The CMAUP database provides collective molecular activities of useful plants (e.g. medicinal and foo...
Database maintenance site:
University of Miami Miller School of Medicine
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Danio rerio | Schizosaccharomyces pombe | ...
Description:
ChIPprimersDB is a public repository of verified qPCR primers for chromatin immunoprecipitation (ChI...
Database maintenance site:
Kunming Institute of Zoology, Chinese Academy of Sciences
Organism(s) covered:
Tupaia belangeri
Description:
Tree Shrew Database is a knowledge base for Chinese tree shrew genome biology. It provides a compreh...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Homo sapiens
Description:
The Cell Model Passports provides access to a cancer cell line and organoid model database containin...
Database maintenance site:
Harbin Medical University
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
CellMarker database provides a manually curated, comprehensive and accurate resource of cell markers...
Database maintenance site:
Huazhong University of Science and Technology
Organism(s) covered:
Homo sapiens
Description:
CancerSplicingQTL is a database to provide a comprehensive resource of splicing quantitative trait l...
Database maintenance site:
Harbin Medical University
Organism(s) covered:
Homo sapiens
Description:
CancerSEA provides an atlas of cancer single-cell functional states and associates protein-coding ge...
Database maintenance site:
Edward Via College of Osteopathic Medicine
Organism(s) covered:
Homo sapiens
Description:
Comparative Analysis of Germline Microsatellites (CAGm) is a database of human germline microsatelli...
Database maintenance site:
Helmholtz Centre for Infection Research
Organism(s) covered:
Pseudomonas aeruginosa
Description:
BACTOME provides detailed information on a large collection of clinical Pseudomonas aeruginosa isola...
Database maintenance site:
Tongji Medical College Huazhong University of Sciences and Technology
Organism(s) covered:
Homo sapiens
Description:
AWESOME is a comprehensive database to predict SNPs that may gain/loss protein post-translational mo...
Database maintenance site:
USC (University of Southern California)
Organism(s) covered:
cellular organisms
Description:
Ancestral Genomes is a resource for the reconstructions of the protein-coding gene content of common...
Database maintenance site:
Institute of Molecular Genetics of the ASCR
Organism(s) covered:
Homo sapiens
Description:
AmtDB is a database of ancient human mitochondrial genomes. It provides both the mtDNA sequences (in...
Database maintenance site:
UCSD (University of California San Diego)
Organism(s) covered:
Thermotoga maritima MSB8 | Methylorubrum extorquens AM1 | Escherichia coli B str. REL606 | Escherichia coli str. K-12 substr. MG1655 | Escherichia coli BW25113
Description:
ALEdb is a database of mutations from adaptive laboratory evolution experimentation. The mutations s...
Database maintenance site:
National Research Institute of Brewing
Organism(s) covered:
Saccharomyces cerevisiae Kyokai no. 7 | Saccharomyces cerevisiae S288c
Description:
SYGD contains the genome sequence of sake yeast strain, Kyokai no. 7 (K7). Users can search and brow...
Database maintenance site:
Iowa State University
Organism(s) covered:
Sus scrofa
Description:
Pig Genome Database (PGD) is a central pig genome information hub to support the community activitie...
Database maintenance site:
Simon Fraser University
Organism(s) covered:
Burkholderia
Description:
The Burkholderia Genome Database provides a resource for cystic fibrosis research community to perfo...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Chrysanthemum morifolium
Description:
Mum GARDEN is a database for cultivated chrysanthemum genomics. Each entry contains sequences (genom...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Eucalyptus camaldulensis
Description:
Eucalyptus camaldulensis Genome Database contains genetic information of E. camaldulensis which was ...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Zoysia japonica | Zoysia matrella | Zoysia pacifica
Description:
Zoysia Genome Database is a database for zoysiagrasses genomics. It contains sequencing and comparat...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Ipomoea batatas
Description:
Sweetpotato GARDEN is a database for Sweetpotato (Ipomoea batatas) genomics. Each entry contains nuc...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Prunus avium | Prunus yedoensis
Description:
DBcherry is a database for cherry genomics. It contains information about Sweet cherry (Prunus avium...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Solanum melongena L.
Description:
Eggplant Genome DataBase is a database about an eggplant (Solanum melongena L.)whole-genome dataset....
Database maintenance site:
MISTEA / LEPSE, INRA (French National Institute for Agricultural Research)
Organism(s) covered:
Viridiplantae
Description:
PHIS is an ontology-driven open source information system designed for plant phenomics. It allows as...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description:
DruMAP is a database about drug metabolism and pharmacokinetics (PK) analysis. It consists of compou...