List of Database Records (records: 2186)
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Inactive
CAGm: Comparative Analysis of Germline Microsatellites
Database maintenance site:
Edward Via College of Osteopathic Medicine
Organism(s) covered:
Homo sapiens
Description:
Comparative Analysis of Germline Microsatellites (CAGm) is a database of human germline microsatelli...
Database maintenance site:
Helmholtz Centre for Infection Research
Organism(s) covered:
Pseudomonas aeruginosa
Description:
BACTOME provides detailed information on a large collection of clinical Pseudomonas aeruginosa isola...
Suspend
AWESOME: A Website Exhibits SNP On Modification Event
Database maintenance site:
Tongji Medical College Huazhong University of Sciences and Technology
Organism(s) covered:
Homo sapiens
Description:
AWESOME is a comprehensive database to predict SNPs that may gain/loss protein post-translational mo...
Database maintenance site:
USC (University of Southern California)
Organism(s) covered:
cellular organisms
Description:
Ancestral Genomes is a resource for the reconstructions of the protein-coding gene content of common...
Database maintenance site:
Institute of Molecular Genetics of the ASCR
Organism(s) covered:
Homo sapiens
Description:
AmtDB is a database of ancient human mitochondrial genomes. It provides both the mtDNA sequences (in...
Database maintenance site:
UCSD (University of California San Diego)
Organism(s) covered:
Thermotoga maritima MSB8 | Methylorubrum extorquens AM1 | Escherichia coli B str. REL606 | Escherichia coli str. K-12 substr. MG1655 | Escherichia coli BW25113
Description:
ALEdb is a database of mutations from adaptive laboratory evolution experimentation. The mutations s...
Database maintenance site:
National Research Institute of Brewing
Organism(s) covered:
Saccharomyces cerevisiae Kyokai no. 7 | Saccharomyces cerevisiae S288c
Description:
SYGD contains the genome sequence of sake yeast strain, Kyokai no. 7 (K7). Users can search and brow...
Database maintenance site:
Iowa State University
Organism(s) covered:
Sus scrofa
Description:
Pig Genome Database (PGD) is a central pig genome information hub to support the community activitie...
Database maintenance site:
Simon Fraser University
Organism(s) covered:
Burkholderia
Description:
The Burkholderia Genome Database provides a resource for cystic fibrosis research community to perfo...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Chrysanthemum morifolium
Description:
Mum GARDEN is a database for cultivated chrysanthemum genomics. Each entry contains sequences (genom...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Eucalyptus camaldulensis
Description:
Eucalyptus camaldulensis Genome Database contains genetic information of E. camaldulensis which was ...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Zoysia japonica | Zoysia matrella | Zoysia pacifica
Description:
Zoysia Genome Database is a database for zoysiagrasses genomics. It contains sequencing and comparat...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Ipomoea batatas
Description:
Sweetpotato GARDEN is a database for Sweetpotato (Ipomoea batatas) genomics. Each entry contains nuc...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Prunus avium | Prunus yedoensis
Description:
DBcherry is a database for cherry genomics. It contains information about Sweet cherry (Prunus avium...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Solanum melongena L.
Description:
Eggplant Genome DataBase is a database about an eggplant (Solanum melongena L.)whole-genome dataset....
Inactive
PHIS: Phenotyping Hybrid Information System
Database maintenance site:
MISTEA / LEPSE, INRA (French National Institute for Agricultural Research)
Organism(s) covered:
Viridiplantae
Description:
PHIS is an ontology-driven open source information system designed for plant phenomics. It allows as...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description:
DruMAP is a database about drug metabolism and pharmacokinetics (PK) analysis. It consists of compou...
Database maintenance site:
University of Georgia, George Washington University
Organism(s) covered:
All
Description:
GlyGen is an integrated database for carbohydrate and glycoconjugate related data. It retrieves info...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Viridiplantae
Description:
Plant GARDEN is a portal site that curates genome and marker information of various plant species. I...
Database maintenance site:
JCVI (J. Craig Venter Institute), Texas Advanced Computing Center, The University of Texas at Austin, University of Cambridge
Organism(s) covered:
Arabidopsis thaliana
Description:
Araport is an open-access online community resource for Arabidopsis research. It hosts the Araport11...
Database maintenance site:
Tokyo Women's Medical University
Organism(s) covered:
Caenorhabditis elegans
Description:
NBRP C. elegans is a National Bioresource Project for the experimental animal "Nematode C. elegans"....
Database maintenance site:
Tohoku University Graduate School of Information Sciences
Organism(s) covered:
Description:
NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the en...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
hGTOP is a database of human, mouse, rat proteins identified in the genome, focuses on a structural ...
Database maintenance site:
Waseda University
Organism(s) covered:
Description:
VaProS is a new data cloud for Structural Life Science, integrates different databases/tools to prov...
Database maintenance site:
Iwate Tohoku Medical Megabank Organization
Organism(s) covered:
Homo sapiens
Description:
iMETHYL is an integrative multi-omics (methylome, transcriptome, and genome) database. These data we...
Database maintenance site:
The University of Tokyo Graduate School of Science The Misaki Marine Biological Station
Organism(s) covered:
Anneissia japonica
Description:
Misaki Marine Biological Station, University of Tokyo, participates in National Bio Resource Project...
Database maintenance site:
RIKEN CBS (RIKEN Center for Brain Science)
Organism(s) covered:
Callithrix jacchus
Description:
The Marmoset Gene Atlas provides a whole brain, high-resolution gene expression atlas in the common ...
Database maintenance site:
RIKEN CBS (RIKEN Center for Brain Science), Brain/MINDS Database Council
Organism(s) covered:
Callithrix jacchus | Homo sapiens
Description:
The Brain/MINDS 2.0 Data Portal shares the data being produced in the Brain/MINDS project. The commo...
Database maintenance site:
Tokai University School of Medicine
Organism(s) covered:
cellular organisms | Viroids | Viruses
Description:
GenomeSync is a large database of genome sequences mostly from NCBI Assembly. Once GenomeSync is dow...
Inactive
GenEpid-J: Database of Pathogen Genomics and Epidemiology
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Escherichia coli | Klebsiella pneumoniae | Enterobacter cloacae | Salmonella | Klebsiella oxytoca | ...
Description:
GenEpid-J is an integrated database of pathogen genomics and epidemiology focused on plasmids involv...
Database maintenance site:
Naturalis Biodiversity Center
Organism(s) covered:
all
Description:
Linnaeus NG is a data management system for species information developed and maintained by Naturali...
Database maintenance site:
GlyCosmos Portal
Organism(s) covered:
Description:
GlyCosmos Portal is a portal site of glycoscience-related web resources, which includes databases an...
Database maintenance site:
Niigata University Faculty of Engineering Department of Information Engineering
Organism(s) covered:
Bacteria | Archaea | Viruses
Description:
tRNADB-CE is a database of manually curated tRNA gene information. It contains tRNA sequences that h...
Database maintenance site:
Boyce Thompson Institute for Plant Research
Organism(s) covered:
Solanum lycopersicum | Solanum pimpinellifolium | Solanum tuberosum | Solanum phureja | Nicotiana | ...
Description:
SGN is a database of genome and phenotype data for species in the Solanaceae and their close relativ...
Database maintenance site:
Department of Molecular Genetics, Brain Research Institute, Niigata University
Organism(s) covered:
Homo sapiens
Description:
JFADdb contains information about mutations in genes linked to dominantly inherited Alzheimer's dise...
Database maintenance site:
Osaka University
Organism(s) covered:
Homo sapiens
Description:
The site introduces evidence-based information on how to consider the relative advantages and disadv...
Database maintenance site:
Organism(s) covered:
Description:
A compendium of the United Kingdom's largest repository of Environmental and Earth Science data.
Database maintenance site:
ATCC Standards Development Organisation, Cell Networks, University of Heidelberg, Genetica DNA Laboratories, JCRB Cell Bank (Japanese Collection of Research Bioresources Cell Bank), RIKEN BRC (RIKEN BioResource Research Center), SIB (Swiss Institute of Bioinformatics), GBSI (UK Global Biological Standards Institute)
Organism(s) covered:
All
Description:
This database lists cell lines that are currently known to be cross-contaminated or otherwise miside...
Database maintenance site:
Department of Biochemistry and Biomedical Sciences, McMaster University
Organism(s) covered:
Bacteria
Description:
A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes...
Database maintenance site:
Australian Research Council, The University of Queensland
Organism(s) covered:
Brassica
Description:
This site hosts Brassica genome databases.
Database maintenance site:
Australian Research Council, Edwards Group, University of Western Australia, The University of Queensland
Organism(s) covered:
Triticum
Description:
An integrated database and portal for wheat genome information.
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans
Description:
Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegan...
Database maintenance site:
MU (Masaryk University)
Organism(s) covered:
Homo sapiens
Description:
A collection of high resolution histological images from contributors across the Czech Republic.
Database maintenance site:
Organism(s) covered:
Drosophila
Description:
A database containing the expression patterns of hundreds of Drosophila genes in 3D at cellular reso...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
European Organisation for Research and Treatment of Cancer database of clinical trials.
Database maintenance site:
San Diego Supercomputer Center
Organism(s) covered:
Bos taurus | Homo sapiens | Mus musculus
Description:
The UCSD Signaling Gateway Molecule Pages provides information on the proteins involved in cell sign...
Database maintenance site:
IGH (Institute of Human Genetics)
Organism(s) covered:
Homo sapiens
Description:
A registry of Hereditary Auto-inflammatory Disorder Mutations.
Database maintenance site:
Indian Institute of Science
Organism(s) covered:
All
Description:
A web based database of Transmembrane Helices in Genome Sequences.
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
Patent data resources at the EBI contain patent abstracts, patent chemical compounds, patent sequenc...
Database maintenance site:
BPS (Bioinformatics Portal Site)
Organism(s) covered:
Fungi
Description:
The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with ...