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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
University of Georgia, George Washington University
Organism(s) covered:
All
Description:
GlyGen is an integrated database for carbohydrate and glycoconjugate related data. It retrieves info...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Viridiplantae
Description:
Plant GARDEN is a portal site that curates genome and marker information of various plant species. I...
Database maintenance site:
JCVI (J. Craig Venter Institute), Texas Advanced Computing Center, The University of Texas at Austin, University of Cambridge
Organism(s) covered:
Arabidopsis thaliana
Description:
Araport is an open-access online community resource for Arabidopsis research. It hosts the Araport11...
Database maintenance site:
Tokyo Women's Medical University
Organism(s) covered:
Caenorhabditis elegans
Description:
NBRP C. elegans is a National Bioresource Project for the experimental animal "Nematode C. elegans"....
Database maintenance site:
Tohoku University Graduate School of Information Sciences
Organism(s) covered:
Description:
NLDB is a database of automatically collected and predicted 3D protein-ligand interactions in the en...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
hGTOP is a database of human, mouse, rat proteins identified in the genome, focuses on a structural ...
Database maintenance site:
Waseda University
Organism(s) covered:
Description:
VaProS is a new data cloud for Structural Life Science, integrates different databases/tools to prov...
Database maintenance site:
Iwate Tohoku Medical Megabank Organization
Organism(s) covered:
Homo sapiens
Description:
iMETHYL is an integrative multi-omics (methylome, transcriptome, and genome) database. These data we...
Database maintenance site:
The University of Tokyo Graduate School of Science The Misaki Marine Biological Station
Organism(s) covered:
Anneissia japonica
Description:
Misaki Marine Biological Station, University of Tokyo, participates in National Bio Resource Project...
Database maintenance site:
RIKEN CBS (RIKEN Center for Brain Science)
Organism(s) covered:
Callithrix jacchus
Description:
The Marmoset Gene Atlas provides a whole brain, high-resolution gene expression atlas in the common ...
Database maintenance site:
RIKEN CBS (RIKEN Center for Brain Science), Brain/MINDS Database Council
Organism(s) covered:
Callithrix jacchus | Homo sapiens
Description:
The Brain/MINDS Data Portal shares the data being produced in the Brain/MINDS project. The common ma...
Database maintenance site:
Tokai University School of Medicine
Organism(s) covered:
cellular organisms | Viroids | Viruses
Description:
GenomeSync is a large database of genome sequences mostly from NCBI Assembly. Once GenomeSync is dow...
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Escherichia coli | Klebsiella pneumoniae | Enterobacter cloacae | Salmonella | Klebsiella oxytoca | ...
Description:
GenEpid-J is an integrated database of pathogen genomics and epidemiology focused on plasmids involv...
Database maintenance site:
Naturalis Biodiversity Center
Organism(s) covered:
all
Description:
Linnaeus NG is a data management system for species information developed and maintained by Naturali...
Database maintenance site:
GlyCosmos Portal
Organism(s) covered:
Description:
GlyCosmos Portal is a portal site of glycoscience-related web resources, which includes databases an...
Database maintenance site:
Niigata University Faculty of Engineering Department of Information Engineering
Organism(s) covered:
Bacteria | Archaea | Viruses
Description:
tRNADB-CE is a database of manually curated tRNA gene information. It contains tRNA sequences that h...
Database maintenance site:
Boyce Thompson Institute for Plant Research
Organism(s) covered:
Solanum lycopersicum | Solanum pimpinellifolium | Solanum tuberosum | Solanum phureja | Nicotiana | ...
Description:
SGN is a database of genome and phenotype data for species in the Solanaceae and their close relativ...
Database maintenance site:
Department of Molecular Genetics, Brain Research Institute, Niigata University
Organism(s) covered:
Homo sapiens
Description:
JFADdb contains information about mutations in genes linked to dominantly inherited Alzheimer's dise...
Database maintenance site:
Osaka University
Organism(s) covered:
Homo sapiens
Description:
The site introduces evidence-based information on how to consider the relative advantages and disadv...
Database maintenance site:
Organism(s) covered:
Description:
This resource provides support to scientific community by providing access to Earth science data and...
Database maintenance site:
Organism(s) covered:
Description:
A compendium of the United Kingdom's largest repository of Environmental and Earth Science data.
Database maintenance site:
ATCC Standards Development Organisation, Cell Networks, University of Heidelberg, Genetica DNA Laboratories, JCRB Cell Bank (Japanese Collection of Research Bioresources Cell Bank), RIKEN BRC (RIKEN BioResource Research Center), SIB (Swiss Institute of Bioinformatics), GBSI (UK Global Biological Standards Institute)
Organism(s) covered:
All
Description:
This database lists cell lines that are currently known to be cross-contaminated or otherwise miside...
Database maintenance site:
Department of Biochemistry and Biomedical Sciences, McMaster University
Organism(s) covered:
Bacteria
Description:
A bioinformatic database of antimicrobial resistance genes, their products and associated phenotypes...
Database maintenance site:
Australian Research Council, The University of Queensland
Organism(s) covered:
Brassica
Description:
This site hosts Brassica genome databases.
Database maintenance site:
Australian Research Council, Edwards Group, University of Western Australia, The University of Queensland
Organism(s) covered:
Triticum
Description:
An integrated database and portal for wheat genome information.
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans
Description:
Whole-genome sequence data, variant calls, and annotations of natural genetic variation in C. elegan...
Database maintenance site:
MU (Masaryk University)
Organism(s) covered:
Homo sapiens
Description:
A collection of high resolution histological images from contributors across the Czech Republic.
Database maintenance site:
Organism(s) covered:
Drosophila
Description:
A database containing the expression patterns of hundreds of Drosophila genes in 3D at cellular reso...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
European Organisation for Research and Treatment of Cancer database of clinical trials.
Database maintenance site:
San Diego Supercomputer Center
Organism(s) covered:
Bos taurus | Homo sapiens | Mus musculus
Description:
The UCSD Signaling Gateway Molecule Pages provides information on the proteins involved in cell sign...
Database maintenance site:
NIH (National Institutes of Health)
Organism(s) covered:
All
Description:
The Cancer gene expression and microarray data of the National Cancer Institute
Database maintenance site:
IGH (Institute of Human Genetics)
Organism(s) covered:
Homo sapiens
Description:
A registry of Hereditary Auto-inflammatory Disorder Mutations.
Database maintenance site:
Institut Pasteur
Organism(s) covered:
Bacteria
Description:
GenoList is an integrated environment for comparative exploration of microbial genomes. The current ...
Database maintenance site:
Indian Institute of Science
Organism(s) covered:
All
Description:
A web based database of Transmembrane Helices in Genome Sequences.
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
Patent data resources at the EBI contain patent abstracts, patent chemical compounds, patent sequenc...
Database maintenance site:
BPS (Bioinformatics Portal Site)
Organism(s) covered:
Fungi
Description:
The CFGP (Comparative Fungal Genomics Platform) was designed for comparative genomics projects with ...
Database maintenance site:
Baylor College of Medicine
Organism(s) covered:
All
Description:
Relative evolutionary importance of amino acids within a protein sequence.
Database maintenance site:
AgBase, Mississippi State University
Organism(s) covered:
Metazoa | Viridiplantae
Description:
AgBase is a curated, open-source, Web-accessible resource for functional analysis of agricultural pl...
Database maintenance site:
IMM (Institute of Molecular Medicine, Peking University)
Organism(s) covered:
Rhesus macaques
Description:
RhesusBase was developed to refine genome-wide macaque gene structures, to integrate macaque functio...
Database maintenance site:
Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College (CAMS&PUMC)
Organism(s) covered:
Bacteria
Description:
VFDB is an integrated and comprehensive database of virulence factors for bacterial pathogens (also ...
Database maintenance site:
University of Washington
Organism(s) covered:
Brugia malayi | Leishmania major | Schistosoma mansoni | Toxoplasma gondii
Description:
TDR Targets integrates chemical and genomic information and allows users to prioritize targets and c...
Database maintenance site:
Structural Bioinformatics Group, Institute of Molecular Biology and Bioinformatics, Charité-University Medicine Berlin
Organism(s) covered:
All
Description:
Drug-related information: medical indications, adverse drug effects, drug metabolism and Gene Ontolo...
Database maintenance site:
Dana-Farber Cancer Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
Comparison system for cancer stem cell analysis
Database maintenance site:
IBMS (Institute of Biomedical Sciences, Academia Sinica)
Organism(s) covered:
Homo sapiens
Description:
Integrated Genomic Database of Non-Small Cell Lung Cancer.
Database maintenance site:
University College London, Research Department of Structural and Molecular Biology, Institute of Structural and Molecular Biology, University College London
Organism(s) covered:
All
Description:
Gene3D uses the information in CATH to predict the locations of structural domains on millions of pr...
Database maintenance site:
Myongji University
Organism(s) covered:
Canis familiaris | Danio rerio | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
Death Domain Database is a manually curated database of protein-protein interactions for Death Domai...
Database maintenance site:
CBI (Center for Bioinformatics, Peking University)
Organism(s) covered:
Homo sapiens
Description:
Autism genetics KnowledgeBase, an evidence-based knowledgebase of autism genetics.
Database maintenance site:
Stanford University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
Oligonucleotides for targeted resequencing of the human genome
Database maintenance site:
Organism(s) covered:
All
Description:
OGEE is an Online GEne Essentiality database. Gene essentiality is not a static and binary property,...
Database maintenance site:
Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory
Organism(s) covered:
Archaea | Bacteria | Eukaryota | Viruses
Description:
The Integrated Microbial Genomes (IMG/M) aims to support the annotation, analysis and distribution o...