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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
Pathogen Genomics Center, National Institute of Infectious Diseases
Organism(s) covered:
Bacilli | Betaproteobacteria | Clostridia | Epsilonproteobacteria | Gammaproteobacteria | ...
Description:
gGENEPID is an integrated database for pathogen genome and epidemiological investigation. It contain...
Database maintenance site:
ZMNH Institute of Medical Systems Biology
Organism(s) covered:
Homo sapiens | Bos taurus | Mus musculus | Rattus norvegicus | Caenorhabditis elegans | ...
Description:
SEA is a database for the expression of small RNA (miRNA, piRNA, snoRNA, snRNA, siRNA) and pathogens...
Database maintenance site:
Research Center of Basic Medical Sciences, Tianjin Medical University
Organism(s) covered:
Homo sapiens
Description:
QTLbase is a database about genome-wide QTL summary statistics for many human molecular traits acros...
Database maintenance site:
Beijing Agro-Biotechnology Research Center, BAAFS
Organism(s) covered:
Chlorophyta | Embryophyta
Description:
PmiREN is a comprehensive database for functional plant miRNA in about 180 species phylogenetically ...
Database maintenance site:
Shanghai Children's Hospital, Shanghai Jiao Tong University
Organism(s) covered:
Homo sapiens
Description:
PhenoModifier is a database about genetic modifiers for elucidating the genetic basis of human pheno...
Database maintenance site:
Organism(s) covered:
Equus caballus | Homo sapiens | Mus musculus | Rattus | Canis lupus familiaris | ...
Description:
It is a database for non-B DNAs which do not fall into a right-handed Watson-Crick double-helix. Thi...
Database maintenance site:
NIHS (National Institute of Health Sciences)
Organism(s) covered:
Description:
It provides information of allergenic proteins and low-molecular weight allergenic compounds.
The a...
Database maintenance site:
Department of Biochemistry, Eötvös Loránd University
Organism(s) covered:
Homo sapiens | Eukaryota | Drosophila melanogaster | Saccharomyces cerevisiae | Caenorhabditis elegans | ...
Description:
PhaSePro is a database of proteins driving LLPS (liquid-liquid phase separation) in cells. For each ...
Database maintenance site:
Peking University
Organism(s) covered:
Homo sapiens | Metazoa | Dictyostelium discoideum | Tetrahymena thermophila | Trypanosoma brucei brucei | ...
Description:
PhaSepDB is a database of proteins related to phase separation (PS) and Membraneless organelles (MLO...
Database maintenance site:
University of Toyama Institute of Natural Medicine
Organism(s) covered:
Viridiplantae
Description:
KampoDB is an integrated database for natural medicines such as herbal medicines. It provides inform...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Candida albicans | Danio rerio | Dictyostelium discoideum | ...
Description:
AlphaFold DB is a database for protein structure predictions for human and 20 other key organisms. E...
Database maintenance site:
Graduate School of Integrated Sciences for Life, Hiroshima University
Organism(s) covered:
Bacteria
Description:
It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID,...
Database maintenance site:
China National Center for Bioinformation / Beijing Institute of Genomics, Chinese
Organism(s) covered:
Bacteria | Archaea
Description:
PADS Arsenal is a database of genes associated with 18 categories of prokaryotic antiviral defense s...
Database maintenance site:
Lécuyer Lab, Institut de Recherches Cliniques de Montéral
Organism(s) covered:
Homo sapiens | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description:
oRNAment is a database of putative RBP (RNA-binding-protein) binding site instances in coding and no...
Database maintenance site:
Institute of Structural and Molecular Biology, Birkbeck College
Organism(s) covered:
Homo sapiens
Description:
OGRDB is a database of the repertoires of human germline receptor alleles. Each data is submitted by...
Database maintenance site:
Huazhong Agricultural University, College of Informatics
Organism(s) covered:
Homo sapiens
Description:
ncRNA-eQTL is a database of SNPs influencing ncRNA (non-coding RNA) expression. It provides informat...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Homo sapiens
Description:
ChemProteoBase is a database about proteomic profiling of cells treated with chemical drugs based on...
Database maintenance site:
Nara Institute of Science and Technology
Organism(s) covered:
Homo sapiens
Description:
KNApSAcK Biomarker is a database for human biomarkers that provide indication of diseases. The bioma...
Database maintenance site:
Hiroshima University Faculty of Pharmaceutical Sciences
Organism(s) covered:
Homo sapiens
Description:
Phos-tag SDS-PAGE database is a collection about Phos-tag (a novel phosphate-binding tag) SDS-PAGE i...
Database maintenance site:
Japan Newt Research Community
Organism(s) covered:
Cynops pyrrhogaster
Description:
IMORI is a database of sequence resources about the Japanese fire bellied newt. It contains sequence...
Database maintenance site:
Osaka Prefecture University
Organism(s) covered:
Ephemeroptera | Odonata | Plecoptera | Hemiptera | Megaloptera | ...
Description:
J-amir is a collection of digital data about aquatic macroinvertebrates inhabiting Japan. It contain...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
ADMIX database is an integrated database about Alzheimer's disease multi-omics data. It contains pub...
Database maintenance site:
DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Organism(s) covered:
Homo sapiens
Description:
NanbyoData provides informative data related to intractable diseases using Nanbyo Disease Ontology (...
Database maintenance site:
LINK-group
Organism(s) covered:
Homo sapiens
Description:
Translocatome is a database that collects and characterises manually curated and predicted transloca...
Database maintenance site:
College of Life Science and Technology, Huazhong Agricultural University
Organism(s) covered:
Bos taurus | Caenorhabditis | Danio rerio | Drosophila | Equus caballus | ...
Description:
Many animal species present sex differences. Sex-associated genes (SAGs), which have female-biased o...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
All
Description:
Genome properties is an annotation system whereby functional attributes can be assigned to a genome,...
Database maintenance site:
BTI (Boyce Thompson Institute, Cornell University)
Organism(s) covered:
Cucurbitaceae
Description:
The recent genome sequence assemblies of major cucurbit crop species, including cucumber, melon, wat...
Database maintenance site:
BII (Bioinformatics Institute, A*STAR)
Organism(s) covered:
All
Description:
The AlloMAPS database provides data on the energetics of communication in proteins with well-documen...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Bacillus subtilis | Brucella suis | Burkholderia pseudomallei K96243 | Burkholderia thailandensis E264 | Chlamydophila caviae | ...
Description:
The Swissregulon Database contains genome-wide annotations of regulatory sites. The predictions are ...
Database maintenance site:
European Medicines Agency
Organism(s) covered:
Homo sapiens
Description:
The EU Clinical Trials Register contains information on interventional clinical trials on medicines ...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information), Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
All
Description:
It is a portal site for the INSDC(International Nucleotide Sequence Database Collaboration), which i...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
LRG is a database of stable genomic, transcript and protein reference sequences for reporting clinic...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
All
Description:
DDBJ BioSample is a database to store descriptive information about biological samples used to gener...
Database maintenance site:
ICH (The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use)
Organism(s) covered:
Description:
MedDRA is a standardized medical terminology for regulatory information of medical products. It is a...
Database maintenance site:
Monarch Initiative
Organism(s) covered:
Homo sapiens
Description:
Mondo is an ontology for integrating disease definitions. It collects disease definitions and data m...
Database maintenance site:
McDonnell Genome Institute at Washington University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrate...
Database maintenance site:
Genome Aggregation Database Consortium
Organism(s) covered:
Homo sapiens
Description:
GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequenc...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregat...
Database maintenance site:
The Jackson Laboratory
Organism(s) covered:
Homo sapiens
Description:
The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in hu...
Database maintenance site:
The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowled...
Database maintenance site:
World Health Organization
Organism(s) covered:
Homo sapiens
Description:
This is a website for ICD (International Statistical Classification of Diseases and Related Health P...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as ca...
Database maintenance site:
Cornell University
Organism(s) covered:
Homo sapiens | Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Drosophila melanogaster | ...
Description:
INstruct is a database of protein interactome networks in human and six model organisms. In this sit...
Database maintenance site:
Cornell University
Organism(s) covered:
Homo sapiens | Saccharomyces cerevisiae | Schizosaccharomyces pombe | cDrosophila melanogaster | Caenorhabditis elegans | ...
Description:
HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The int...
Database maintenance site:
NIHS (National Institute of Health Sciences)
Organism(s) covered:
Entoloma rhodopolium | Omphalotus guepiniformis | Colchicum autumnale | Narcissus | Veratrum | ...
Description:
MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of f...
Database maintenance site:
Broad Institute of Harvard and MIT, UCSD (University of California San Diego)
Organism(s) covered:
Homo sapiens
Description:
MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which...
Database maintenance site:
Icahn School of Medicine at Mount Sinai
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Citrus unshiu | Citrus trifoliata | Citrus clementina | Citrus sinensis | Citrus maxima | ...
Description:
Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides ...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Homo sapiens
Description:
AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels ...
Database maintenance site:
Development of a Drug Discovery Informatics System
Organism(s) covered:
Homo sapiens | Rattus norvegicus
Description:
Development of a Drug Discovery Informatics System is a portal site containing databases and tools f...