Database Record
Inactive
MethMotif
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02484 | ||||
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| Database nameName of the database | MethMotif | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | https://bioinfo-csi.nus.edu.sg/methmotif | ||||
| Database maintenance siteSite maintaining the database | Cancer Science Institute of Singapore | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Singapore | ||||
| Database descriptionDatabase descirption | MethMotif is an integrative database of transcription factor binding motifs coupled with DNA methylation profiles using the results of ChIP-seq and Whole Genome Bisulfite Sequencing (WGBS). The data in this database were originally downloaded from ENCODE and GEO. It is constructed with following parts; 1) Explore in Heatmap: Distribution of CG beta scores in factor peak regions 2) MethMotif Database: A two-dimensional database 3) MethMotif Batch Query: A tool implemented in MethMotif website, which allows users to study the occurrences of TFBSs and their respective DNA methylation states within a given list of genomic loci. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | https://bioinfo-csi.nus.edu.sg/methmotif/release_notes/data_download.php | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | https://bioinfo-csi.nus.edu.sg/methmotif/manual/index.php | ||||
| Contact information of database | https://bioinfo-csi.nus.edu.sg/methmotif/cite/index.php | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2019-11-05 | ||||
| Last update date of this recordLast update date of this English record | 2021-06-03 | ||||
| Record license | Creative Commons CC0 license |