Database Record
PopHumanScan
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02516 | ||||
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| Database nameName of the database | PopHumanScan | ||||
| Alternative nameAlternative name of the database | ― | ||||
| URLURL of the database | https://pophumanscan.uab.cat | ||||
| Database maintenance siteSite maintaining the database | Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Spain | ||||
| Database descriptionDatabase descirption | PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of selection along the human lineage. This database retrieved the population genomic data from PopHuman, which represents the most complete pipeline for population genomics analysis of the 1000 genome project data. To detect local adaptation, many methods and statistics were applied, which were selection tests based on the allele frequency spectrum and the levels of variability (Tajima’s D, Fu and Li’s D and F, Fay and Wu’s H); selection tests based on comparisons of polymorphism and divergence and its derived estimators (MKT, α); selection tests based on the linkage disequilibrium (iHS and XP-EHH) and selection tests based on population differentiation (FST). | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | https://pophumanscan.uab.cat/data/files/ | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | https://pophumanscan.uab.cat/about.php | ||||
| Contact information of database | https://pophumanscan.uab.cat/contact.php | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2020-04-14 | ||||
| Last update date of this recordLast update date of this English record | 2020-04-14 | ||||
| Record license | Creative Commons CC0 license |