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NGS-QC: Next Generation Sequencing Quality Control Generator

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC02505
Database nameName of the database NGS-QC
Alternative nameAlternative name of the database Next Generation Sequencing Quality Control Generator
URLURL of the database http://www.ngs-qc.org/
Database maintenance siteSite maintaining the database Institute of Genetics and Molecular and Cellular Biology
Country/RegionCountry or region name where the database maintenance site is located France
Database descriptionDatabase descirption NGS-QC database is the first QC indicator database covering the largest collection of ChIP-seq and enrichment-related NGS datasets. Most of the current certified entries are part of the public repository GEO. Database can be searched based on Organism, Target Molecule, QC grade, etc. A scatter plot provides the user a summary and exact range of the quality descriptors of all the experiments that come under their searched queries. Users can evaluate the quality of their own NGS dataset relative to the datasets present in the entire database through the Galaxy platform instance NGS-QC Generator. Other tools like LOGIQA hosting quality scores for long-range genome interaction assays (e.g. Hi-C), and QC Genomics providing a central access to the largest collection of genomic data are also available.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Arabidopsis thaliana (3702), Caenorhabditis elegans (6239), Danio rerio (7955), Drosophila melanogaster (7227), Gallus gallus (9031), Homo sapiens (9606), Mus musculus (10090), Pan troglodytes (9598), Rattus norvegicus (10116), Saccharomyces cerevisiae (4932)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:24038469
DOI:10.1093/nar/gkt829
PubMed ID:26484107
DOI:10.1016/j.gdata.2014.08.002
PubMed ID:27008019
DOI:10.1007/978-1-4939-3578-9_13
PubMed ID:27335635
DOI:10.12688/f1000research.7637.2
PubMed ID:27185059
DOI:10.1186/s12864-016-2642-1
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data ―
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" http://www.ngs-qc.org/guidelines.php
Contact information of database contact@ngs-qc.org
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing ―
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2020-03-10
Last update date of this recordLast update date of this English record 2020-03-10
Record license Creative Commons CC0 license