List of Database Records (records: 2186)
Sort by:
Organism covered
Category
Operational Status
Region
Others
Database maintenance site:
ICH (The International Council for Harmonisation of Technical Requirements for Pharmaceuticals for Human Use)
Organism(s) covered:
Description:
MedDRA is a standardized medical terminology for regulatory information of medical products. It is a...
Database maintenance site:
Monarch Initiative
Organism(s) covered:
Homo sapiens
Description:
Mondo is an ontology for integrating disease definitions. It collects disease definitions and data m...
Database maintenance site:
McDonnell Genome Institute at Washington University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
DGIdb is a database about drug-gene interactions and the druggable genome. It collects and integrate...
Database maintenance site:
Genome Aggregation Database Consortium
Organism(s) covered:
Homo sapiens
Description:
GnomAD is a resource for exome and genome sequencing data from a wide variety of large-scale sequenc...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Homo sapiens
Description:
MedGen is a portal database about conditions and phenotypes related to Medical Genetics. It aggregat...
Database maintenance site:
The Jackson Laboratory
Organism(s) covered:
Homo sapiens
Description:
The Human Phenotype Ontology (HPO) provides a standardized vocabulary of phenotype specialized in hu...
Database maintenance site:
The McDonnell Genome Institute, Washington University School of Medicine
Organism(s) covered:
Homo sapiens
Description:
CIViC is a knowledgebase for Clinical Interpretation of Variants in Cancer. It has collected knowled...
Database maintenance site:
World Health Organization
Organism(s) covered:
Homo sapiens
Description:
This is a website for ICD (International Statistical Classification of Diseases and Related Health P...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
ChEMBL is a database for bioactive molecules. It collects information of small molecules, such as ca...
Database maintenance site:
Cornell University
Organism(s) covered:
Homo sapiens | Arabidopsis thaliana | Caenorhabditis elegans | Drosophila melanogaster | Drosophila melanogaster | ...
Description:
INstruct is a database of protein interactome networks in human and six model organisms. In this sit...
Database maintenance site:
Cornell University
Organism(s) covered:
Homo sapiens | Saccharomyces cerevisiae | Schizosaccharomyces pombe | cDrosophila melanogaster | Caenorhabditis elegans | ...
Description:
HINT (High-quality INTeractomes) is a database of high-quality protein-protein interactions. The int...
Database maintenance site:
NIHS (National Institute of Health Sciences)
Organism(s) covered:
Entoloma rhodopolium | Omphalotus guepiniformis | Colchicum autumnale | Narcissus | Veratrum | ...
Description:
MushPlant database is a database about toxic plants and mushrooms. It contains statistical data of f...
Database maintenance site:
Broad Institute of Harvard and MIT, UCSD (University of California San Diego)
Organism(s) covered:
Homo sapiens
Description:
MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which...
Database maintenance site:
Icahn School of Medicine at Mount Sinai
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
CREEDS is a knowledgebase for associations between drugs, genes and diseases based on the data from ...
Database maintenance site:
NARO (National Agriculture and Food Research Organization)
Organism(s) covered:
Citrus unshiu | Citrus trifoliata | Citrus clementina | Citrus sinensis | Citrus maxima | ...
Description:
Mikan Genome Database (MiGD) is an integrated database for mandarin molecular breeding. It provides ...
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research)
Organism(s) covered:
Homo sapiens
Description:
AMED Cardiotoxicity Database is a database about small molecules which bind to various ion channels ...
Database maintenance site:
Development of a Drug Discovery Informatics System
Organism(s) covered:
Homo sapiens | Rattus norvegicus
Description:
Development of a Drug Discovery Informatics System is a portal site containing databases and tools f...
Database maintenance site:
Institute of Biophysics, Chinese Academy of Sciences
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans | ...
Description:
piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis.
Inactive
PDX Finder: Patient-Derived tumor Xenograft Finder
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), The Jackson Laboratory
Organism(s) covered:
Mus musculus | Homo sapiens
Description:
PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Pati...
Database maintenance site:
BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered:
Homo sapiens
Description:
LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of huma...
Database maintenance site:
BPRC (Beijing Proteome Research Center)
Organism(s) covered:
AII
Description:
iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtain...
Database maintenance site:
Fudan University
Organism(s) covered:
Description:
PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the rela...
Database maintenance site:
La Trobe Institute for Molecular Sciences
Organism(s) covered:
All
Description:
Vesiclepedia is a manually curated compendium of molecular data (lipid, RNA and protein) identified ...
Database maintenance site:
University of Melbourne
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Stemformatics is a web-based data platform to find interesting genes in gene expression datasets of ...
Database maintenance site:
ICube, Université de Strasbourg
Organism(s) covered:
Eukaryota | Archaea | Bacteria
Description:
OrthoInspector is a catalog of orthologs predicted across three domains of life, Eukaryota, Bacteria...
Database maintenance site:
TAGC, Inserm U1090
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
MoonDB is a database of predicted and manually curated extreme multifunctional (EMF) proteins and mo...
Database maintenance site:
College of Bioinformatics Science and Technology, Harbin Medical University
Organism(s) covered:
all
Description:
LncACTdb is a database for LncRNA-Associated Competing Triplets (LncACT). It provides manually curat...
Database maintenance site:
Network Biomedicine Lab, Yonsei University, Marcotte Lab, University of Texas at Austin
Organism(s) covered:
Homo sapiens
Description:
HumanNet is a database for human gene networks, which integrates diverse types of omics data and pro...
Database maintenance site:
The Walter and Eliza Hall Institute of Medical Research
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Haemosphere is a data portal for RNA-Seq datasets, including each celltype of the dataset, cell_line...
Database maintenance site:
EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
GENCODE is a database to identify and classify all gene features in the human and mouse genomes. It ...
Database maintenance site:
University of Washington
Organism(s) covered:
Homo sapiens
Description:
It is a site for Combined Annotation-Dependent Depletion (CADD), which is a framework for scoring th...
Database maintenance site:
Weizmann Institute of Science
Organism(s) covered:
Saccharomyces cerevisiae
Description:
YeastRGB is a database for abundance and localization of proteins in Saccharomyces cerevisiae. It pr...
Database maintenance site:
LCSB (Luxembourg Centre for Systems Biomedicine of the University of Luxembourg)
Organism(s) covered:
Homo sapiens | Bacteria
Description:
VMH is an integrated database for human and gut microbial metabolisms linked to diseases and nutriti...
Database maintenance site:
University of Michigan Medical School
Organism(s) covered:
Bacteria | Viruses | Parasitus | Fungi
Description:
Victors is a database about virulence factors (VFs) collected by manual curation from peer-reviewed ...
Database maintenance site:
UniLectin
Organism(s) covered:
All
Description:
UniLectin is a database for manually curated and predicted lectins. It provides information about th...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Mus musculus
Description:
MoG+ is a mouse genome database which shows mouse genomic variation visually to compare inbred mouse...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
All
Description:
BioResource MetaDatabase is a data repository for metadata of bioresources in RIKEN. This database p...
Database maintenance site:
University College Cork
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Escherichia coli | Homo sapiens | Mus musculus | ...
Description:
Trips-viz is a database for Ribosome profiling (Ribo-seq) data that have been produced using publicl...
Database maintenance site:
Beijing University of Chinese Medicine
Organism(s) covered:
Homo sapiens
Description:
SymMap is a database for integration with traditional Chinese medicine (TCM) and modern medicine (MM...
Database maintenance site:
Agricultural Genetic Engineering Research Institute
Organism(s) covered:
All
Description:
SSRome is an integrated database and pipelines for exploring microsatellites in a wide range of orga...
Database maintenance site:
Harbin Medical University
Organism(s) covered:
Homo sapiens
Description:
SEdb is a database about super-enhancers in gene regulation. It collects detailed genetic and epigen...
Database maintenance site:
CRG (Centre for Genomic Regulation)
Organism(s) covered:
Homo sapiens | Mus musculus | Saccharomycotina
Description:
RNAct is a database of the protein–RNA interactome. RNA-binding proteins (RBPs) are collected from e...
Database maintenance site:
INRAE (National Research Institute for Agriculture, Food and Environment)
Organism(s) covered:
All
Description:
RetroRules is a database of reaction rules for metabolic pathway. It provides a complete set of reac...
Database maintenance site:
Sun Yat-sen University Cancer Center
Organism(s) covered:
Homo sapiens
Description:
qPhos is a database for comprehensive resource of protein phosphorylation in human tissues and cell ...
Database maintenance site:
Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona
Organism(s) covered:
Homo sapiens
Description:
PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of select...
Database maintenance site:
Saarland University
Organism(s) covered:
Bacteria
Description:
PLSDB is a database about bacterial plasmids retrieved from the NCBI nucleotide database. Users can ...
Database maintenance site:
Faculdade de Medicina, Universidade de Lisboa
Organism(s) covered:
All
Description:
pATLAS is a database for searching plasmids with tools to visualize relationships between plasmids. ...
Database maintenance site:
Catalyst Informatics Project
Organism(s) covered:
Description:
Catalyst Acquisition by Data Science (CADS) is an integrated visual platform for materials informati...
Inactive
pEVE: predicted endogenous viral elements in eukaryotic genomes
Database maintenance site:
Tokai University School of Medicine
Organism(s) covered:
Eukaryota | Viruses
Description:
pEVE is a database about predicted endogenous viral elements (EVEs) in eukaryotic genomes. It contai...
Database maintenance site:
Japan Monkey Centre
Organism(s) covered:
Cebuella | Aotus | Cebus | Macaca | Cercopithecus | ...
Description:
JMC Primates Brain Imaging Repository is a collection of high-resolution MRI data of non-human prima...