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List of Database Records (records: 2170)
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Database maintenance site:
Institute of Biophysics, Chinese Academy of Sciences
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Drosophila melanogaster | Caenorhabditis elegans | ...
Description:
piRBase stores information on piRNAs and piRNA-associated data to support piRNA functional analysis.
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), The Jackson Laboratory
Organism(s) covered:
Mus musculus | Homo sapiens
Description:
PDX Finder is an open repository for the upload and storage of clinical, genomic and functional Pati...
Database maintenance site:
BIGD (Big Data Center, Beijing Institute of Genomics)
Organism(s) covered:
Homo sapiens
Description:
LncBook is a curated knowledgebase of human lncRNAs that features a comprehensive collection of huma...
Database maintenance site:
BPRC (Beijing Proteome Research Center)
Organism(s) covered:
AII
Description:
iProX is a public platform for collecting and sharing raw data, analysis results and metadata obtain...
Database maintenance site:
Fudan University
Organism(s) covered:
Description:
PreMedKB is a database for integrating information on diseases, genes, variants, drugs, and the rela...
Database maintenance site:
La Trobe Institute for Molecular Sciences
Organism(s) covered:
All
Description:
Vesiclepedia is a manually curated compendium of molecular data (lipid, RNA and protein) identified ...
Database maintenance site:
University of Melbourne
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Stemformatics is a web-based data platform to find interesting genes in gene expression datasets of ...
Database maintenance site:
ICube, Université de Strasbourg
Organism(s) covered:
Eukaryota | Archaea | Bacteria
Description:
OrthoInspector is a catalog of orthologs predicted across three domains of life, Eukaryota, Bacteria...
Database maintenance site:
TAGC, Inserm U1090
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Saccharomyces cerevisiae
Description:
MoonDB is a database of predicted and manually curated extreme multifunctional (EMF) proteins and mo...
Database maintenance site:
College of Bioinformatics Science and Technology, Harbin Medical University
Organism(s) covered:
all
Description:
LncACTdb is a database for LncRNA-Associated Competing Triplets (LncACT). It provides manually curat...
Database maintenance site:
Network Biomedicine Lab, Yonsei University, Marcotte Lab, University of Texas at Austin
Organism(s) covered:
Homo sapiens
Description:
HumanNet is a database for human gene networks, which integrates diverse types of omics data and pro...
Database maintenance site:
The Walter and Eliza Hall Institute of Medical Research
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Haemosphere is a data portal for RNA-Seq datasets, including each celltype of the dataset, cell_line...
Database maintenance site:
EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
GENCODE is a database to identify and classify all gene features in the human and mouse genomes. It ...
Database maintenance site:
University of Washington
Organism(s) covered:
Homo sapiens
Description:
It is a site for Combined Annotation-Dependent Depletion (CADD), which is a framework for scoring th...
Database maintenance site:
Weizmann Institute of Science
Organism(s) covered:
Saccharomyces cerevisiae
Description:
YeastRGB is a database for abundance and localization of proteins in Saccharomyces cerevisiae. It pr...
Database maintenance site:
LCSB (Luxembourg Centre for Systems Biomedicine of the University of Luxembourg)
Organism(s) covered:
Homo sapiens | Bacteria
Description:
VMH is an integrated database for human and gut microbial metabolisms linked to diseases and nutriti...
Database maintenance site:
University of Michigan Medical School
Organism(s) covered:
Bacteria | Viruses | Parasitus | Fungi
Description:
Victors is a database about virulence factors (VFs) collected by manual curation from peer-reviewed ...
Database maintenance site:
UniLectin
Organism(s) covered:
All
Description:
UniLectin is a database for manually curated and predicted lectins. It provides information about th...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Mus musculus
Description:
MoG+ is a mouse genome database which shows mouse genomic variation visually to compare inbred mouse...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
All
Description:
BioResource MetaDatabase is a data repository for metadata of bioresources in RIKEN. This database p...
Database maintenance site:
University College Cork
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Escherichia coli | Homo sapiens | Mus musculus | ...
Description:
Trips-viz is a database for Ribosome profiling (Ribo-seq) data that have been produced using publicl...
Database maintenance site:
Beijing University of Chinese Medicine
Organism(s) covered:
Homo sapiens
Description:
SymMap is a database for integration with traditional Chinese medicine (TCM) and modern medicine (MM...
Database maintenance site:
Agricultural Genetic Engineering Research Institute
Organism(s) covered:
All
Description:
SSRome is an integrated database and pipelines for exploring microsatellites in a wide range of orga...
Database maintenance site:
Harbin Medical University
Organism(s) covered:
Homo sapiens
Description:
SEdb is a database about super-enhancers in gene regulation. It collects detailed genetic and epigen...
Database maintenance site:
CRG (Centre for Genomic Regulation)
Organism(s) covered:
Homo sapiens | Mus musculus | Saccharomycotina
Description:
RNAct is a database of the protein–RNA interactome. RNA-binding proteins (RBPs) are collected from e...
Database maintenance site:
INRAE (National Research Institute for Agriculture, Food and Environment)
Organism(s) covered:
All
Description:
RetroRules is a database of reaction rules for metabolic pathway. It provides a complete set of reac...
Database maintenance site:
Sun Yat-sen University Cancer Center
Organism(s) covered:
Homo sapiens
Description:
qPhos is a database for comprehensive resource of protein phosphorylation in human tissues and cell ...
Database maintenance site:
Institut de Biotecnologia i de Biomedicina, Universitat Autònoma de Barcelona
Organism(s) covered:
Homo sapiens
Description:
PopHumanScan is a catalog about thousands of regions of the human genome showing evidences of select...
Database maintenance site:
Saarland University
Organism(s) covered:
Bacteria
Description:
PLSDB is a database about bacterial plasmids retrieved from the NCBI nucleotide database. Users can ...
Database maintenance site:
Faculdade de Medicina, Universidade de Lisboa
Organism(s) covered:
All
Description:
pATLAS is a database for searching plasmids with tools to visualize relationships between plasmids. ...
Database maintenance site:
Catalyst Informatics Project
Organism(s) covered:
Description:
Catalyst Acquisition by Data Science (CADS) is an integrated visual platform for materials informati...
Database maintenance site:
Tokai University School of Medicine
Organism(s) covered:
Eukaryota | Viruses
Description:
pEVE is a database about predicted endogenous viral elements (EVEs) in eukaryotic genomes. It contai...
Database maintenance site:
Japan Monkey Centre
Organism(s) covered:
Cebuella | Aotus | Cebus | Macaca | Cercopithecus | ...
Description:
JMC Primates Brain Imaging Repository is a collection of high-resolution MRI data of non-human prima...
Database maintenance site:
NBDC (Japan Science and Technology Agency Department of NBDC Program)
Organism(s) covered:
Bovidae | Cervidae | Giraffidae | Hippopotamidae | Cetacea | ...
Description:
Collagenseq is a reference database about type I collagen. Each record obtained from various species...
Database maintenance site:
CBBD-OIL
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
LncRRIsearch is a web server for comprehensive prediction of interactions between long non-coding RN...
Database maintenance site:
Cistrome Project
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Cistrome DB is a portal site for public ChIP-seq and DNase-seq datasets. It provides a comprehensive...
Database maintenance site:
University of Toronto
Organism(s) covered:
Saccharomyces cerevisiae
Description:
CYCLoPs is a comprehensive database of protein abundance and localization for budding yeast Saccharo...
Database maintenance site:
Stanford University
Organism(s) covered:
Saccharomyces cerevisiae
Description:
YeastGFP is a database of yeast strains expressing full-length, chromosomally tagged green fluoresce...
Database maintenance site:
Institute of Genetics and Molecular and Cellular Biology
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Gallus gallus | ...
Description:
NGS-QC database is the first QC indicator database covering the largest collection of ChIP-seq and e...
Database maintenance site:
University of Massachusetts Medical School
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
Factorbook is a transcription factor (TF)-centric wiki-style repository of all ENCODE ChIP-seq datas...
Database maintenance site:
Kazusa DNA Research Institute, National Institute of Genetics
Organism(s) covered:
Description:
Food Metabolome Repository is a database for food metabolome data obtained using liquid chromatograp...
Database maintenance site:
FMODD Consortium
Organism(s) covered:
All
Description:
FMODB is a database of quantum mechanical data based on the FMO method. It contains PDBID-Chain (det...
Database maintenance site:
Hiroshima University Amphibian Research Center
Organism(s) covered:
Xenopus tropicalis
Description:
XenoBiores maintains data collected from the NBRP Xenopus tropicalis Project to establish inbred and...
Database maintenance site:
Molecular Profiling Research Center for Drug Discovery, AIST
Organism(s) covered:
Homo sapiens | Rattus norvegicus
Description:
toxRank is an application that provides a list of compounds those exhibit an expression profile simi...
Database maintenance site:
Molecular Profiling Research Center for Drug Discovery, AIST
Organism(s) covered:
Homo sapiens | Rattus norvegicus
Description:
toxBridge is a database that stores statistical analysis results using differential gene expression ...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Description:
TOXPILOT is a system for visualization maps of toxic process ontology (TXPO) which systematizes term...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition, Kumamoto University
Organism(s) covered:
Homo sapiens | Rattus norvegicus
Description:
DILI-cSEARCH is a comprehensive database about liver toxicity caused by drugs and chemicals. It offe...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
rattus | Homo sapiens
Description:
DILI-TOOLBOX is a portal site for liver toxicity database and prediction systems developed in the AM...
Database maintenance site:
Department of Electrical Engineering, National Cheng Kung University
Organism(s) covered:
Caenorhabditis elegans | Caenorhabditis briggsae
Description:
piRTarBase is a database about PIWI-interacting RNAs (piRNAs) which are a class of small noncoding R...
Database maintenance site:
National Genomics Data Center, Beijing Institute of Genomics, Chinese Academy of Sciences
Organism(s) covered:
Viridiplantae
Description:
PED is a curated database of RNA editosome in plants, which is focused on the curation, integration ...