Database Record
Inactive
LOCATE: subcellular localization database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00296 | ||||||||
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| Database nameName of the database | LOCATE | ||||||||
| Alternative nameAlternative name of the database | subcellular localization database | ||||||||
| URLURL of the database | http://locate.imb.uq.edu.au/ | ||||||||
| Database maintenance siteSite maintaining the database | The University of Queensland | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Australia | ||||||||
| Database descriptionDatabase descirption | LOCATE is a database containing information on how and where in the cell and its membrane proteins are located and on the organization of the cell membrane. This information can reveal the functional role a specific protein fulfills in a cell. The content of this database was collected by computational methods, immunofluorescence-based assays and by manually screening more than 1,700 publications. The proteins studied were obtained from the RIKEN FANTOM4 mouse and human protein sequence set. This database contains information on 58,128 mouse proteins and 64,637 human proteins. A keyword search is available whereby data can be retrieved by entering a protein's ID, description, domain ID, domain name or location. An Advanced search option is also provided where a combination of search criteria may be entered. | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Mus musculus (10090) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||
| Operational statusOperational status for the database | Inactive | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | http://locate.imb.uq.edu.au/downloads.shtml | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/biodbcore-000212 | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||||||
| Last update date of this recordLast update date of this English record | 2020-08-10 | ||||||||
| Record license | Creative Commons CC0 license |