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TogoVar: Integrated database of Japanese genomic variation

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC02359
Database nameName of the database TogoVar
Alternative nameAlternative name of the database Integrated database of Japanese genomic variation
URLURL of the database https://togovar.org/
Database maintenance siteSite maintaining the database NBDC (Japan Science and Technology Agency Department of NBDC Program) (Link to J-Global), DBCLS (Database Center for Life Science, Research Organization of Information and Systems)
Country/RegionCountry or region name where the database maintenance site is located Japan
Database descriptionDatabase descirption TogoVar (NBDC's integrated database of Japanese genomic variation) is a database that has collected and organized genome sequence differences between individuals (variants) in the Japanese population and disease information associated with them. TogoVar provides variant frequencies in the Japanese population that have been aggregated across research projects. Two available datasets, JGA-NGS and JGA-SNP, are obtained by aggregating individual genomic data that have been registered in the NBDC Human Database / Japanese Genotype-phenotype Archive (JGA). In addition, TogoVar integrates information related to genotypes or phenotypes that has been compiled independently in a variety of different databases and provides information for interpreting variants in a one-stop, easy-to-understand manner. Users can learn how to use it by a movie: https://togotv.dbcls.jp/en/20181012.html
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Homo sapiens (9606)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:-
DOI:doi: 10.1038/s41439-022-00222-9
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data https://togovar.org/doc/downloads
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data https://grch38.togovar.org/downloads/release/current/grch38/frequency/tsv/README.txt, https://grch37.togovar.org/downloads/release/current/grch37/frequency/tsv/README.txt
Link(s) to Terms of useLinks to terms of use of downloadable data https://togovar.org/doc/terms
Link(s) to "How to use" ―
Contact information of database https://togovar.org/doc/ja/contact
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV https://togotv.dbcls.jp/en/result.html?type=manual&lang=en&page=1&query=TogoVar
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/biodbcore-001182/
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2018-10-23
Last update date of this recordLast update date of this English record 2023-10-01
Record license Creative Commons CC0 license