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List of Database Records (records: 2182)
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Database maintenance site:
European Bioinformatics Institute
Organism(s) covered:
All
Description:
RNAcentral is a free, public resource that offers integrated access to a comprehensive and up-to-dat...
Database maintenance site:
Wishart Research Group, University of Alberta
Organism(s) covered:
Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | Drosophila melanogaster | Escherichia coli | ...
Description:
PathBank is an interactive, visual database containing more than 100 000 machine-readable pathways f...
Database maintenance site:
BBSRC Babraham Institute, Cardiff University
Organism(s) covered:
All
Description:
LIPID Metabolites And Pathways Strategy (LIPID MAPS®) is a multi-institutional supported website and...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
All
Description:
Genomic Expression Archive (GEA) is a public database of functional genomics data such as gene expre...
Database maintenance site:
Department of Biomolecular Sciences, Nagoya University Graduate School of Medicine, Japan Industrial Safety and Health Association
Organism(s) covered:
Homo sapiens
Description:
CBLD is a database about small molecule chemical exposure and the exposure biomarkers found in exper...
Database maintenance site:
Sun Yat-sen University Cancer Center
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus | Saccharomyces | Schizosaccharomyces pombe
Description:
qPTM is a database about quantitative phosphoproteome data. It contains 6 types of PTMs including ac...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
EpiFactors is a web-accessible database that provides broad information about human proteins and com...
Database maintenance site:
Genome Editing Innovation Center, Hiroshima University
Organism(s) covered:
Description:
Triterpene RDF is a database of plant enzymes and transcription factors involved in triterpene biosy...
Database maintenance site:
Faculty of Science and Technology, Sophia University
Organism(s) covered:
Description:
NA3DMotif is a database for 3D structures of nucleic acids. It contains structural motifs of nucleic...
Database maintenance site:
Department of Computer Science, Institute of Science Tokyo
Organism(s) covered:
Description:
CycPeptMPDB is a database of membrane permeability of cyclic peptide. It provides not only the basic...
Database maintenance site:
National Cancer Center Japan
Organism(s) covered:
Description:
The SSCV DB is a registry of splice-site creating variants (SSCVs) affecting disease-causing variant...
Database maintenance site:
Organism(s) covered:
Description:
DLiP is a database of small and medium-sized compounds expected to PPI inhibitions. This database co...
Closed
Aspergillus oryzae EST DataBase
Database maintenance site:
National Research Institute of Brewing
Organism(s) covered:
Aspergillus oryzae
Description:
This database allows users to explore the gene expression of Aspergillus oryzae with different envir...
Database maintenance site:
RIKEN CBS (RIKEN Center for Brain Science)
Organism(s) covered:
Callithrix jacchus
Description:
Marmoset PFC Connectome is a database about connectomics mapping of the marmoset prefrontal cortex (...
Database maintenance site:
The International Union of Basic and Clinical Pharmacology (IUPHAR), British Pharmacological Society (BPS)
Organism(s) covered:
Homo sapiens | Mus musculus | Plasmodium falciparum | Rattus
Description:
The information in the database is presented at two levels: the initial view or landing pages for ea...
Database maintenance site:
National Cancer Institute at Frederick
Organism(s) covered:
Homo sapiens
Description:
NCI Thesaurus (NCIt) provides reference terminology for many NCI and other systems. It covers vocabu...
Database maintenance site:
WHO Collaborating Centre for Drug Statistics Methodology, Norwegian Institute of Public Health
Organism(s) covered:
Homo sapiens
Description:
WHOCC ATC/DDD Index is a list of the complete anatomical therapeutic chemical index with drug therap...
Database maintenance site:
Vertebrate Gene Nomenclature Committee
Organism(s) covered:
Bos taurus | Canis lupus familiaris | Equus caballus | Felis catus | Macaca mulatta | ...
Description:
The Vertebrate Gene Nomenclature Committee (VGNC) is an extension of the established HGNC (HUGO Gene...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Homo sapiens
Description:
DDrare is a database about clinical trials, drug target genes and pathways which related to mostly r...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
BSM-Arc is an archive about protein/DNA/RNA structure obtained via in-silico methods. Each entry con...
Database maintenance site:
Osaka University Institute for Protein Research
Organism(s) covered:
Description:
EMPIAR-PDBj is a mirroring server of EMPIAR, which is a public resource for raw, 2D electron microsc...
Database maintenance site:
Nagahama Institute of Bio-Science and Technology
Organism(s) covered:
Description:
PreDom is a database and related prediction services about domain-domain interfaces. It consists of ...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Antheraea yamamai | Antheraea pernyi | Samia cynthia pryeri | Samia ricini | Rhodinia fugax | ...
Description:
Wild moths genetic resources is a resource database about wild moths. It contains ordering informati...
Database maintenance site:
CUBIC Stars Co., Ltd.
Organism(s) covered:
Mus musculus
Description:
CUBIC-Cloud is a cloud-based framework for single-cell-resolution whole mouse brain analysis.
Brain ...
Database maintenance site:
BioBank Japan Project, Department of Statistical Genetics at Osaka University Graduate School of Medicine
Organism(s) covered:
Homo sapiens
Description:
PheWeb.jp is a database about genome-wide association study (GWAS) summary statistics of the BioBank...
Database maintenance site:
RIKEN
Organism(s) covered:
Saccharomycetales
Description:
Yeast strains with specific characteristics is a list of Yeast strains in JCM. This list is generate...
Database maintenance site:
RIKEN
Organism(s) covered:
Saccharomycotina | Pezizomycotina | Ustilaginomycotina | Pucciniomycotina | Agaricomycotina | ...
Description:
Genome sequencing of JCM strains under the NBRP program (Eukaryotic microbes) is a database about se...
Database maintenance site:
RIKEN
Organism(s) covered:
Homo sapiens | Gallus gallus | Rattus norvegicus | Canis lupus | Macaca fascicularis
Description:
FANTOM6 is a database for function of long non-coding RNAs (lncRNAs) in the human genome.
It contai...
Database maintenance site:
Kagoshima University The Kagoshima University Museum
Organism(s) covered:
Tracheophyta
Description:
Kagoshima University Museum Vascular Plants Database is a database of vascular plant specimens colle...
Database maintenance site:
Nihon University School of Dentistry at Matsudo
Organism(s) covered:
Homo sapiens
Description:
The OOPID (Open Oral Pathological Images Dataset) project is developing open images dataset of human...
Database maintenance site:
The University of Tokyo
Organism(s) covered:
Homo sapiens
Description:
ImmuNexUT is a gene expression and eQTL atlas from 28 types of immune cells isolated from 10 distinc...
Database maintenance site:
Hiroshima City University
Organism(s) covered:
Description:
PyDISH is a database of heme porphyrin structures. Each entry is composed of one heme molecule ligan...
Database maintenance site:
RIKEN
Organism(s) covered:
Mus musculus
Description:
NeuroGT database is a brain atlas of neurogenic tagging mouse lines with CreER drivers for birthdate...
Database maintenance site:
Experimental Plant Division, RIKEN BioResource Research Center
Organism(s) covered:
Arabidopsis thaliana | Brachypodium distachyon | Populus nigra | Oryza sativa | Lotus japonicus | ...
Description:
Exp-Plant Catalog is a database of plant bio-resource information in the stock of Experimental Plant...
Database maintenance site:
Warwick Medical School, University of Warwick
Organism(s) covered:
Salmonella | Escherichia | Shigella | Mycobacterium | Vibrio | ...
Description:
EnteroBase is an online resource for analyzing and visualizing genomic variation within enteric bact...
Database maintenance site:
Tokyo University of Marine Science and Technology
Organism(s) covered:
All
Description:
JEDI System/OCEANS DB is a database containing images of marine plankton and environmental monitorin...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
RNAapt3D is a database of RNA aptamer which contains RNA sequences, their secondary/tertiary structu...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
Phosprof (phosphorylation profiling database) is a database to present cellular response to represen...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
PubChem is the world's largest collection of freely accessible chemical information. Searches can be...
Database maintenance site:
Bioinformation and DDBJ Center, National Institute of Genetics, Research Organization of Information and Systems
Organism(s) covered:
Description:
MetaboBank is an integrated metabolome data repository. It contains various metabolome data such as ...
Database maintenance site:
Database Center for Life Science (DBCLS)
Organism(s) covered:
Homo sapiens
Description:
This site is a platform for sharing data from studies in humans, providing rules and frameworks for ...
Database maintenance site:
Geneva Antibody Facility
Organism(s) covered:
All
Description:
The ABCD database is a repository of sequenced antibodies, integrating curated information about the...
Database maintenance site:
National Museum of Nature and Science
Organism(s) covered:
Tracheophyta | Ascomycota
Description:
Flora of Myanmar Database is a database about flora specimens collected in Myanmar (Burma). It conta...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Sorghum bicolor
Description:
MOROKOSHI Sorghum transcriptome database provides transcriptomic data in Sorghum bicolor. It contain...
Database maintenance site:
Faculty of Science, Ochanomizu University, Faculty of Science and Engineering, Waseda University
Organism(s) covered:
All
Description:
BioHiKR is a database for bioluminescence. Each entry contains information of organism, protein, hab...
Database maintenance site:
The Isambert Lab, Institute Curie
Organism(s) covered:
Vertebrata | Oryzias latipes | Tetraodon nigroviridis | Gasterosteus aculeatus | Danio rerio
Description:
OHNOLOGS is a repository of genes retained from whole genome duplications in the Vertebrate genomes....
Database maintenance site:
CCMB (CSIR-Centre for Cellular & Molecular Biology)
Organism(s) covered:
All
Description:
MSDB is a database of simple sequence repeats (SSRs), also known as microsatellites. Each entry cont...
Database maintenance site:
Koch Institute for Integrative Cancer Research at MIT, University of Illinois at Chicago
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
MatrisomeDB is a database of proteomic data for extracellular matrix (ECM). It provides hierarchical...
Database maintenance site:
Johns Hopkins School of Medicine
Organism(s) covered:
Homo sapiens | Mus musculus | Drosophila melanogaster | Caenorhabditis elegans | Danio rerio | ...
Description:
EnhancerAtlas is a database providing enhancer annotation in nine species including human (hg19), mo...
Database maintenance site:
USC (University of Southern California)
Organism(s) covered:
All
Description:
DNAproDB is a database for DNA-protein complexes. The site consists of a database, structure process...