Database Record
PreDom
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02646 |
|---|---|
| Database nameName of the database | PreDom |
| Alternative nameAlternative name of the database | ― |
| URLURL of the database | http://harrier.nagahama-i-bio.ac.jp/domain/ |
| Database maintenance siteSite maintaining the database | Nagahama Institute of Bio-Science and Technology (Link to J-Global) |
| Country/RegionCountry or region name where the database maintenance site is located | Japan |
| Database descriptionDatabase descirption | PreDom is a database and related prediction services about domain-domain interfaces. It consists of following sections: PreDom:DiD is a database of domain-domain interface which used information of structural domains defined in SCOP or CATH database. It contains amino acid sequence, domain-domain interaction residue and interactive 3D image with JSmol. PreDom:Interface predicts domain-domain interaction residues from the 3D structure of domain. Domain interface residues are predicted by two algorithm; KIP and IP. PreDom:Structure predicts 3D structure about multi-domain protein using 3D structure of each domain. PreDom:Evtrace predicts functional sites of a protein on the basis of phylogenetic and structural information. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | ― |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | Japanese, English |
| Operational statusOperational status for the database | Active |
| Link(s) to Downloadable dataLinks to downloadable data | ― |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― |
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― |
| Link(s) to "How to use" | ― |
| Contact information of database | https://harrier.nagahama-i-bio.ac.jp/domain/mail.php?lang=en |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | ― |
| Link to MEDALS Database listLink to MEDALS Database list | ― |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | ― |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | Integbio Database Catalog |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2024-03-22 |
| Last update date of this recordLast update date of this English record | 2024-03-22 |
| Record license | Creative Commons CC0 license |