Database Record
real-time quantitative PCR Primer Database: qPrimerDB
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02277 |
|---|---|
| Database nameName of the database | real-time quantitative PCR Primer Database |
| Alternative nameAlternative name of the database | qPrimerDB |
| URLURL of the database | http://biodb.swu.edu.cn/qprimerdb/ |
| Database maintenance siteSite maintaining the database | Southwest University |
| Country/RegionCountry or region name where the database maintenance site is located | China |
| Database descriptionDatabase descirption | The qPrimerDB database stores information on qPCR primers. Accessible through a web front-end providing gene-specific and pre-computed primer pairs across 147 different organisms, including human, mouse, zebrafish, yeast, thale cress, rice, and maize. The qPrimerDB provides an interactive and information-rich web graphical interface to display search and BLAST results as table-based descriptions and associated links. In this database, we provide 3,331,426 of the best primer pairs for each gene based on primer pair coverage (PPC), as well as 47,726,569 alternative gene-specific primer pairs, which can be conveniently batch downloaded. We validated the specificity and efficiency of the qPCR primer pairs for 66 randomly selected genes in six different organisms through qPCR assays and gel electrophoresis. The qPrimerDB database represents a valuable, timesaving resource for gene expression analysis. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Arabidopsis thaliana (3702), Bombyx mori (7091), Brassica (3705), Drosophila (7215), Homo sapiens (9606), Mus musculus (10090), Oryza (4527), Schizosaccharomyces pombe (4896) |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | English |
| Operational statusOperational status for the database | Active |
| Link(s) to Downloadable dataLinks to downloadable data | ― |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― |
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― |
| Link(s) to "How to use" | ― |
| Contact information of database | ― |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | ― |
| Link to MEDALS Database listLink to MEDALS Database list | ― |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/10.25504/FAIRsharing.qy4b7s |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | See the corresponding part in the FAIRsharing record |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2019-03-28 |
| Last update date of this recordLast update date of this English record | 2020-07-09 |
| Record license | Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |