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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
ACTREC (Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre)
Organism(s) covered:
Homo sapiens
Description:
HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The Expression Atlas is a free resource providing information on gene expression patterns under diff...
Database maintenance site:
Organism(s) covered:
All
Description:
A resource for exploring the evolution of protein function through relationships in sequence, struct...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia, United States Department of Health and Human Services
Organism(s) covered:
Fungi | Oomycetes
Description:
FungiDB is an integrated genomic and functional genomic database for the kingdom Fungi. The database...
Database maintenance site:
Stockholm Bioinformatics Center
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Canis familiaris | Ciona intestinalis | Danio rerio | ...
Description:
FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional c...
Database maintenance site:
Howard Hughes Medical Institute, Harvard Medical School
Organism(s) covered:
Drosophila melanogaster
Description:
DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), ...
Database maintenance site:
Mayo Clinic, Scottsdale, MIT (Massachusetts Institute of Technology)
Organism(s) covered:
All
Description:
Thermodynamics calculator for biochemical reactions. eQuilibrator is a simple web interface designed...
Database maintenance site:
Genomics Institute, University of California
Organism(s) covered:
Caenorhabditis | Drosophila | Homo sapiens | Mus musculus
Description:
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research g...
Database maintenance site:
Universitetet i Bergen
Organism(s) covered:
Eukaryota
Description:
This computational biology resource mainly focuses on annotation and detection of eukaryotic linear ...
Database maintenance site:
Organism(s) covered:
Description:
eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of ortholo...
Database maintenance site:
Texas A&M University
Organism(s) covered:
Escherichia coli
Description:
EcoliWiki is a community-based resource for the annotation of all non-pathogenic E. coli, its phages...
Database maintenance site:
Disease Systems Biology Group, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen
Organism(s) covered:
Homo sapiens
Description:
The DistiLD database aims to increase the usage of existing genome-wide association studies (GWAS) r...
Database maintenance site:
Structural Biology and Bioinformatics Division Indian Institute of Chemical Biology
Organism(s) covered:
Actinobacillus | Aeromonas | Arcanobacterium | Bacillus | Bordetella | ...
Description:
DBETH is the Database of Bacterial Exotoxins for Human. The aim of this database is to assemble info...
Database maintenance site:
European Medicines Agency
Organism(s) covered:
Description:
EudraCT (European Union Drug Regulating Authorities Clinical Trials) is the European Clinical Trials...
Database maintenance site:
ORCID (Open Research and Contributor ID Initiative)
Organism(s) covered:
Description:
ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique re...
Database maintenance site:
Organism(s) covered:
Description:
GESDB is a platform for sharing simulation data and discussion of simulation techniques for human ge...
Database maintenance site:
University of California
Organism(s) covered:
All
Description:
BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions. BiGG Models integr...
Database maintenance site:
AgBase, Mississippi State University
Organism(s) covered:
All
Description:
HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). H...
Database maintenance site:
Universiteit Stellenbosch
Organism(s) covered:
All
Description:
JWS Online is a Systems Biology tool for the construction, modification and simulation of kinetic mo...
Database maintenance site:
Labome
Organism(s) covered:
All
Description:
Labome organizes reagent information from high quality suppliers. The reagents include antibodies, s...
Database maintenance site:
ELIXIR, Wellcome Genome Campus, URGI, transplant
Organism(s) covered:
Agaricus subrefescens | Arabidopsis thaliana | Arabis alpina | Botrytis cinerea B0510 | Botrytis cinerea T4 | ...
Description:
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridge...
Database maintenance site:
HITS (Heidelberg Institute for Theoretical Studies), University of Manchester
Organism(s) covered:
All
Description:
The FAIRDOMHub is a publicly available repository build using the SEEK software, which enables colla...
Database maintenance site:
Auckland Bioengineering Institute
Organism(s) covered:
All
Description:
The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, pro...
Database maintenance site:
Personal Health Informatics - Tampere University
Organism(s) covered:
Description:
The dataset was obtained from series of usability tests on a software tool for visualizing continuou...
Database maintenance site:
Swiss-Prot group, SIB Swiss Institute of Bioinformatics, Vital-IT group, SIB Swiss Institute of Bioinformatics
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Mycobacterium tuberculosis | ...
Description:
SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and...
Database maintenance site:
Stanford University Center for Biomedical Informatics Research, University of Miami School of Medicine
Organism(s) covered:
All
Description:
RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts ...
Database maintenance site:
MPIO (Max Planck Institue for Ornithology), University of Konstanz Library
Organism(s) covered:
Animalia
Description:
This data repository allows users to publish animal tracking and animal-borne sensor datasets that h...
Database maintenance site:
Baylor College of Medicine, Human Microbiome Project, Broad Institute, JCVI (J. Craig Venter Institute), DACC (NIH Data Analysis and Coordination Center), Washington University in St Louis School of Medicine
Organism(s) covered:
Homo sapiens
Description:
The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of gene...
Database maintenance site:
USC (University of Southern California)
Organism(s) covered:
Danio rerio | Homo sapiens | Mus musculus
Description:
FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing researc...
Database maintenance site:
Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School
Organism(s) covered:
Homo sapiens | Primates
Description:
The National Sleep Research Resource (NSRR) offers free web access to large collections of de-identi...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The MHAS study is a series of questionnaires distributed in waves, the fourth of which was fielded i...
Database maintenance site:
INSERM (Institut National de la Sante et de la Recherche Medicale), Pasteur Institute of Morocco
Organism(s) covered:
Homo sapiens
Description:
A comprehensive database established to offer a web-based access to founder mutation data in Mediter...
Database maintenance site:
Biozentrum, University of Basel, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Description:
The Model Archive provides a stable archive for computational macro-molecular models published in th...
Database maintenance site:
University of Pennsylvania, IBI (Institute for Biomedical Informatics, University of Pennsylvania)
Organism(s) covered:
Homo sapiens
Description:
Integrated annotation and sequencing-based expression data for all major classes of human small non-...
Database maintenance site:
CPGR (Centre for Proteomic and Genomic Research)
Organism(s) covered:
Homo sapiens
Description:
The LINCS Data Portal provides a unified interface for searching LINCS dataset packages and reagents...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
eMERGE is a national network organized and funded by the National Human Genome Research Institute (N...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Autism Brain Imaging Data Exchange (ABIDE) is a resource serving Autism spectrum disorders (ASD) dat...
Database maintenance site:
Gail and Gerald Oppenheimer Center for Neurobiology of Stress at UCLA, University of California
Organism(s) covered:
Homo sapiens
Description:
The PAIN Repository is a brain imaging archive for structural and functional magnetic resonance scan...
Database maintenance site:
Eawag, Johannes Gutenberg University
Organism(s) covered:
Bacteria
Description:
enviPath is both a database and a prediction system, for the microbial biotransformation of organic ...
Database maintenance site:
Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR)
Organism(s) covered:
Archaea | Bacteria
Description:
SigMol is a specialized repository of quorom sensing signaling molecules (QSSMs) in prokaryotes. Sig...
Database maintenance site:
ICREA (Cataland Institution for Research and Advanced Studies), BSC (Barcelona Supercomputing Center), Barcelona University, Institute for Research in Biomedicine
Organism(s) covered:
All
Description:
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNAS...
Database maintenance site:
College of Bioinformatics Science and Technology, Harbin Medical University, GCER (Group of Computational Epigenetic Research), Lab of Developmental Biology, Harbin Institute of Technology
Organism(s) covered:
All | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus
Description:
SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, stora...
Database maintenance site:
George Washington University
Organism(s) covered:
Homo sapiens
Description:
BioXpress is a curated gene expression and disease association database where the expression levels ...
Database maintenance site:
CIIT (Comsats Institute of Information Technology), Seoul National University
Organism(s) covered:
Archaea | Bacteria
Description:
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,4...
Database maintenance site:
Baylor University, Churchill Group, The Jackson Laboratory, University of Tennessee
Organism(s) covered:
Caenorhabditis elegans | Canis familiaris | Danio rerio | Drosophila melanogaster | Gallus gallus | ...
Description:
The GeneWeaver data and analytics website is a publically available resource for storing, curating a...
Database maintenance site:
Sequentia Biotech SL
Organism(s) covered:
Chlorophyta | Viridiplantae
Description:
We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant specie...
Database maintenance site:
IITH (Indian Institute of Technology Hyderabad)
Organism(s) covered:
Description:
EK3D - an E. coli K antigen 3-dimensional structure database is a repository of 72 E. coli K antigen...
Database maintenance site:
University of Vienna, Department of Microbiology and Ecosystem Science
Organism(s) covered:
All
Description:
probeBase is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and ...
Database maintenance site:
Ifremer (Institut francais de recherche pour l'exploitation de la mer)
Organism(s) covered:
All
Description:
Seanoe (SEA scieNtific Open data Edition) is a publisher of scientific data in the field of marine s...