Notice：Temporary Service Outage
for All Services on the “biosciencedbc.jp” and “integbio.jp” Domains
(Saturday, January 17, 2026, 20:30～21:00) https://biosciencedbc.jp/news/20260107-02.html |
List of Database Records (records: 2182)
Sort by:
Organism covered
Category
Operational Status
Region
Others
Database maintenance site:
Personal Health Informatics - Tampere University
Organism(s) covered:
Description:
The dataset was obtained from series of usability tests on a software tool for visualizing continuou...
Database maintenance site:
Swiss-Prot group, SIB Swiss Institute of Bioinformatics, Vital-IT group, SIB Swiss Institute of Bioinformatics
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Mycobacterium tuberculosis | ...
Description:
SwissLipids is an expert-curated resource that provides a framework for the integration of lipid and...
Database maintenance site:
Stanford University Center for Biomedical Informatics Research, University of Miami School of Medicine
Organism(s) covered:
All
Description:
RegenBase is a knowledge base of SCI biology. RegenBase integrates curated literature-sourced facts ...
Database maintenance site:
MPIO (Max Planck Institue for Ornithology), University of Konstanz Library
Organism(s) covered:
Animalia
Description:
This data repository allows users to publish animal tracking and animal-borne sensor datasets that h...
Database maintenance site:
Baylor College of Medicine, Human Microbiome Project, Broad Institute, JCVI (J. Craig Venter Institute), DACC (NIH Data Analysis and Coordination Center), Washington University in St Louis School of Medicine
Organism(s) covered:
Homo sapiens
Description:
The NIH Common Fund Human Microbiome Project (HMP) was established in 2008, with the mission of gene...
Database maintenance site:
USC (University of Southern California)
Organism(s) covered:
Danio rerio | Homo sapiens | Mus musculus
Description:
FaceBase is a collaborative NIDCR-funded consortium to generate data in support of advancing researc...
Database maintenance site:
Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School
Organism(s) covered:
Homo sapiens | Primates
Description:
The National Sleep Research Resource (NSRR) offers free web access to large collections of de-identi...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The MHAS study is a series of questionnaires distributed in waves, the fourth of which was fielded i...
Database maintenance site:
INSERM (Institut National de la Sante et de la Recherche Medicale), Pasteur Institute of Morocco
Organism(s) covered:
Homo sapiens
Description:
A comprehensive database established to offer a web-based access to founder mutation data in Mediter...
Database maintenance site:
Biozentrum, University of Basel, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Description:
The Model Archive provides a stable archive for computational macro-molecular models published in th...
Database maintenance site:
University of Pennsylvania, IBI (Institute for Biomedical Informatics, University of Pennsylvania)
Organism(s) covered:
Homo sapiens
Description:
Integrated annotation and sequencing-based expression data for all major classes of human small non-...
Database maintenance site:
CPGR (Centre for Proteomic and Genomic Research)
Organism(s) covered:
Homo sapiens
Description:
The LINCS Data Portal provides a unified interface for searching LINCS dataset packages and reagents...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
eMERGE is a national network organized and funded by the National Human Genome Research Institute (N...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Autism Brain Imaging Data Exchange (ABIDE) is a resource serving Autism spectrum disorders (ASD) dat...
Database maintenance site:
Eawag, Johannes Gutenberg University
Organism(s) covered:
Bacteria
Description:
enviPath is both a database and a prediction system, for the microbial biotransformation of organic ...
Database maintenance site:
Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR)
Organism(s) covered:
Archaea | Bacteria
Description:
SigMol is a specialized repository of quorom sensing signaling molecules (QSSMs) in prokaryotes. Sig...
Database maintenance site:
ICREA (Cataland Institution for Research and Advanced Studies), BSC (Barcelona Supercomputing Center), Barcelona University, Institute for Research in Biomedicine
Organism(s) covered:
All
Description:
Atomistic Molecular Dynamics Simulation Trajectories and Analyses of Nucleic Acid Structures. BIGNAS...
Database maintenance site:
College of Bioinformatics Science and Technology, Harbin Medical University, GCER (Group of Computational Epigenetic Research), Lab of Developmental Biology, Harbin Institute of Technology
Organism(s) covered:
All | Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus
Description:
SEA (Super-Enhancer Archive) is a web-based comprehensive resource focusing on the collection, stora...
Database maintenance site:
George Washington University
Organism(s) covered:
Homo sapiens
Description:
BioXpress is a curated gene expression and disease association database where the expression levels ...
Database maintenance site:
CIIT (Comsats Institute of Information Technology), Seoul National University
Organism(s) covered:
Archaea | Bacteria
Description:
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,4...
Database maintenance site:
Baylor University, Churchill Group, The Jackson Laboratory, University of Tennessee
Organism(s) covered:
Caenorhabditis elegans | Canis familiaris | Danio rerio | Drosophila melanogaster | Gallus gallus | ...
Description:
The GeneWeaver data and analytics website is a publically available resource for storing, curating a...
Database maintenance site:
Sequentia Biotech SL
Organism(s) covered:
Chlorophyta | Viridiplantae
Description:
We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant specie...
Database maintenance site:
IITH (Indian Institute of Technology Hyderabad)
Organism(s) covered:
Description:
EK3D - an E. coli K antigen 3-dimensional structure database is a repository of 72 E. coli K antigen...
Database maintenance site:
University of Vienna, Department of Microbiology and Ecosystem Science
Organism(s) covered:
All
Description:
probeBase is a manually maintained and curated database of rRNA-targeted oligonucleotide probes and ...
Database maintenance site:
Ifremer (Institut francais de recherche pour l'exploitation de la mer)
Organism(s) covered:
All
Description:
Seanoe (SEA scieNtific Open data Edition) is a publisher of scientific data in the field of marine s...
Database maintenance site:
BIOBIX (Lab of bioinformatics and computational genomics)
Organism(s) covered:
Description:
sORFs.org is a database for sORFs identified using ribosome profiling. Starting from ribosome profil...
Database maintenance site:
ANDS (Australian National Data Service), eResearch Centre, Monash University
Organism(s) covered:
Description:
This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) o...
Database maintenance site:
BioVeL, Encyclopedia of Life, Natural History Museum, Pensoft Publishers, BHL (The Biodiversity Heritage Library), ViBRANT (Virtual Biodiversity Research and Access Network for Taxonomy), Vizzuality, e-monocot project
Organism(s) covered:
All
Description:
Scratchpads are an online virtual research environment for biodiversity for the sharing of data and ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining ...
Database maintenance site:
Bioinformatics and Computational biology Unit, Molecular genetics Lab, University of Rome Tor Vergata
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling i...
Database maintenance site:
University of Rome Tor Vergata
Organism(s) covered:
Viruses
Description:
VirusMentha is a collection of viral interactions manually curated from protein-protein databases th...
Database maintenance site:
Organism(s) covered:
All
Description:
iDigBio is the US national resource for digitized information about vouchered natural history collec...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
ReMap is an integrative analysis of transcription factor ChIP-seq experiments publicly available, me...
Database maintenance site:
Beth Israel Deaconess Medical Center, Boston Children's Hospital, Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School, Dana-Farber Cancer Institute, Harvard Medical School, Massachusetts General Hospital, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The PlasmID Repository provides researchers with inexpensive sequencing and plasmid services, holdin...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
NDCT is an informatics platform for the sharing of clinical trial data funded by the National Instit...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
RDoCdb is an informatics platform for the sharing of human subjects data related to Mental Health re...
Database maintenance site:
University of Indiana
Organism(s) covered:
All
Description:
A world bioinformatic public service for high-speed access to up-to-date DNA & protein biological se...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The NCBI BioSample database stores submitter-supplied descriptive information, or metadata, about th...
Database maintenance site:
The Institute for Quantitative Social Service, Harvard University, Harvard Medical School, SBGrid Consortium
Organism(s) covered:
All
Description:
The Structural Biology Data Grid (SBGrid-DG) community-driven repository to preserve primary experim...
Database maintenance site:
Organism(s) covered:
All
Description:
The Metabolomics Workbench serves as a national and international repository for metabolomics data a...
Database maintenance site:
University of Illinois at Chicago
Organism(s) covered:
All
Description:
MoonProt Database is a manually curated, searchable, internet-based resource with information about ...
Database maintenance site:
LONI (Laboratory of Neuro Imaging, University of Southern California)
Organism(s) covered:
Homo sapiens
Description:
PPMI is an observational clinical study to verify progression markers in Parkinson's disease. The st...
Database maintenance site:
University of Oxford, University of Minnesota, Washington University in St Louis, Radboud University
Organism(s) covered:
Homo sapiens
Description:
The Human Connectome Project (HCP) houses and distributes public connectome study data for a series ...
Database maintenance site:
UCSD (University of California San Diego)
Organism(s) covered:
Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Mus musculus
Description:
The NIDDK Information Network provides access to large pools of data relevant to the mission of NIDD...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK...
Database maintenance site:
Beth Israel Deaconess Medical Center, LCP (Laboratory for Computational Physiology, Massachusetts Institute of Technology), Philips Healthcare
Organism(s) covered:
Homo sapiens
Description:
MIMIC-III (Medical Information Mart for Intensive Care III) is a large, freely-available database co...
Database maintenance site:
Harvard Stem Cell Institute, Oxford e-Research Centre, Department of Engineering Science, University of Oxford
Organism(s) covered:
Danio rerio | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The Stem Cell Commons were initiated by the Harvard Stem Cell Institute to develop a community for s...
Database maintenance site:
transPLANT (trans-national infrastructure for plant genomic science), IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:
Viridiplantae
Description:
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German...
Database maintenance site:
Centre sur la Biodiversite de l'Universite de Montreal
Organism(s) covered:
All
Description:
Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical i...
Database maintenance site:
CRIA (The Reference Center on Environmental Information)
Organism(s) covered:
All
Description:
speciesLink (also known as the Distributed Information System for Biological Collections: Integratin...