List of Database Records (records: 2186)
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Database maintenance site:
George Washington University
Organism(s) covered:
Homo sapiens
Description:
BioXpress is a curated gene expression and disease association database where the expression levels ...
Database maintenance site:
CIIT (Comsats Institute of Information Technology), Seoul National University
Organism(s) covered:
Archaea | Bacteria
Description:
The HGTree database provides putative genome-wide horizontal gene transfer (HGT) information for 2,4...
Database maintenance site:
Baylor University, Churchill Group, The Jackson Laboratory, University of Tennessee
Organism(s) covered:
Caenorhabditis elegans | Canis familiaris | Danio rerio | Drosophila melanogaster | Gallus gallus | ...
Description:
The GeneWeaver data and analytics website is a publically available resource for storing, curating a...
Database maintenance site:
Sequentia Biotech SL
Organism(s) covered:
Chlorophyta | Viridiplantae
Description:
We developed a pipeline to annotate lncRNAs (Long non-coding RNAs) and applied it to 37 plant specie...
Database maintenance site:
IITH (Indian Institute of Technology Hyderabad)
Organism(s) covered:
Description:
EK3D - an E. coli K antigen 3-dimensional structure database is a repository of 72 E. coli K antigen...
Database maintenance site:
Ifremer (Institut francais de recherche pour l'exploitation de la mer)
Organism(s) covered:
All
Description:
Seanoe (SEA scieNtific Open data Edition) is a publisher of scientific data in the field of marine s...
Database maintenance site:
ANDS (Australian National Data Service), eResearch Centre, Monash University
Organism(s) covered:
Description:
This database enables the reliable identification of an individual Interferon Regulated Gene (IRG) o...
Database maintenance site:
BioVeL, Encyclopedia of Life, Natural History Museum, Pensoft Publishers, BHL (The Biodiversity Heritage Library), ViBRANT (Virtual Biodiversity Research and Access Network for Taxonomy), Vizzuality, e-monocot project
Organism(s) covered:
All
Description:
Scratchpads are an online virtual research environment for biodiversity for the sharing of data and ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Colorectral Cancer Atlas is an web-based resource which integrates genomic and proteomic pertaining ...
Database maintenance site:
Bioinformatics and Computational biology Unit, Molecular genetics Lab, University of Rome Tor Vergata
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
SIGNOR, the SIGnaling Network Open Resource, organizes and stores in a structured format signaling i...
Database maintenance site:
University of Rome Tor Vergata
Organism(s) covered:
Viruses
Description:
VirusMentha is a collection of viral interactions manually curated from protein-protein databases th...
Database maintenance site:
Organism(s) covered:
All
Description:
iDigBio is the US national resource for digitized information about vouchered natural history collec...
Database maintenance site:
Beth Israel Deaconess Medical Center, Boston Children's Hospital, Division of Sleep & Circadian Disorders, Brigham and Women's Hospital/Harvard Medical School, Dana-Farber Cancer Institute, Harvard Medical School, Massachusetts General Hospital, NCI (National Cancer Institute, National Institutes of Health)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The PlasmID Repository provides researchers with inexpensive sequencing and plasmid services, holdin...
Database maintenance site:
NIMH (National Institute of Mental Health)
Organism(s) covered:
Homo sapiens
Description:
RDoCdb is an informatics platform for the sharing of human subjects data related to Mental Health re...
Database maintenance site:
University of Indiana
Organism(s) covered:
All
Description:
A world bioinformatic public service for high-speed access to up-to-date DNA & protein biological se...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
The NCBI BioSample database stores submitter-supplied descriptive information, or metadata, about th...
Database maintenance site:
The Institute for Quantitative Social Service, Harvard University, Harvard Medical School, SBGrid Consortium
Organism(s) covered:
All
Description:
The Structural Biology Data Grid (SBGrid-DG) community-driven repository to preserve primary experim...
Database maintenance site:
Organism(s) covered:
All
Description:
The Metabolomics Workbench serves as a national and international repository for metabolomics data a...
Database maintenance site:
University of Illinois at Chicago
Organism(s) covered:
All
Description:
MoonProt Database is a manually curated, searchable, internet-based resource with information about ...
Database maintenance site:
LONI (Laboratory of Neuro Imaging, University of Southern California)
Organism(s) covered:
Homo sapiens
Description:
PPMI is an observational clinical study to verify progression markers in Parkinson's disease. The st...
Database maintenance site:
University of Oxford, University of Minnesota, Washington University in St Louis, Radboud University
Organism(s) covered:
Homo sapiens
Description:
The Human Connectome Project (HCP) houses and distributes public connectome study data for a series ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The NIDDK Central Repository stores biosamples, genetic and other data collected in designated NIDDK...
Database maintenance site:
Beth Israel Deaconess Medical Center, LCP (Laboratory for Computational Physiology, Massachusetts Institute of Technology), Philips Healthcare
Organism(s) covered:
Homo sapiens
Description:
MIMIC-III (Medical Information Mart for Intensive Care III) is a large, freely-available database co...
Database maintenance site:
Harvard Stem Cell Institute, Oxford e-Research Centre, Department of Engineering Science, University of Oxford
Organism(s) covered:
Danio rerio | Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The Stem Cell Commons were initiated by the Harvard Stem Cell Institute to develop a community for s...
Database maintenance site:
transPLANT (trans-national infrastructure for plant genomic science), IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:
Viridiplantae
Description:
This repository provides several plant genomic and phenotypic datasets resulting from IPK and German...
Database maintenance site:
Centre sur la Biodiversite de l'Universite de Montreal
Organism(s) covered:
All
Description:
Biological collections are replete with taxonomic, geographic, temporal, numerical, and historical i...
Database maintenance site:
MNHN (Muséum National d'Histoire Naturelle)
Organism(s) covered:
Fulgoroidea | Fulgoromorpha | Hemiptera | Insecta
Description:
Fulgoromorpha Lists On the Web (FLOW) is an online database that aims to provide an easy-access summ...
Database maintenance site:
MVZ (Museum of Vertebrate Zoology at Berkeley), University of Colorado Boulder
Organism(s) covered:
All
Description:
VertNet is a NSF-funded collaborative project that makes biodiversity data free and available on the...
Database maintenance site:
INI (The USC Mark and Mary Stevens Neuroimaging and Informatics Institute, University of Southern California)
Organism(s) covered:
Homo sapiens
Description:
The LONI Image Data Archive (IDA) is a user-friendly environment for archiving, searching, sharing, ...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The immune tolerance data management and visualization portal for studies sponsored by the Immune To...
Database maintenance site:
CEDAR (Center for Expanded Data Annotation and Retrieval), Human Immunology Project Consortium, ISA-Tools, University of Oxford, Northrop Grumman Health IT, Stanford University, Technion - Israel Institute of Technology, University at Buffalo, University of California San Francisco, AMP (Accelerating Medicines Partnership)
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
The Immunology Database and Analysis Portal (ImmPort) data repository was created for the exploratio...
Database maintenance site:
MGI (Mouse Genome Informatics)
Organism(s) covered:
Mus musculus
Description:
The Gene Expression Database (GXD) is a community resource for gene expression information from the ...
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Felis catus | Homo sapiens | Macaca mulatta | ...
Description:
Open Connectome Project: Reverse Engineering the Brain One Synapse at a Time
Database maintenance site:
University of Michigan
Organism(s) covered:
Archaea | Bacteria
Description:
The ribosomal RNA operon copy number database is a publicly available, curated resource for ribosoma...
Database maintenance site:
COS (Center for Open Science)
Organism(s) covered:
All
Description:
The Open Science Framework (OSF) is a free and open free, open repository and platform to enable col...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
DEPOD - the human DEPhOsphorylation Database is a manually curated database collecting human active ...
Database maintenance site:
University of Padova
Organism(s) covered:
All
Description:
MobiDB is a database of intrinsically disordered regions (IDRs) and related features from various so...
Database maintenance site:
LINK-group, NetBiol, Semmelweis University
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Saccharomyces cerevisiae
Description:
The compartmentalized protein-protein interaction database (ComPPI), provides qualitative informatio...
Database maintenance site:
CPqRR (Fiocruz Minas Centro de Pesquisas Rene Rachou), St Vincent's Institute, Department of Biochemistry, University of Cambridge
Organism(s) covered:
All
Description:
Platinum is a manually curated, literature-derived database comprising over 1,000 mutations which fo...
Database maintenance site:
University of Warsaw
Organism(s) covered:
All
Description:
KnotProt collects information about proteins with knots or slipknots. The knotting complexity of pro...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
euL1db, the European database of L1-HS retrotransposon insertions in humans, provides a curated and ...
Database maintenance site:
Organism(s) covered:
Description:
Bio2RDF is an open-source project that uses Semantic Web technologies to build and provide the large...
Suspend
Nuclear Receptor Signaling Atlas: NURSA
Database maintenance site:
Baylor College of Medicine
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The mission of NURSA is to accrue, develop, and communicate information that advances our understand...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
Open Source Brain is a resource for sharing and collaboratively developing computational models of n...
Database maintenance site:
Cambridge Systems Biology Centre, University of Cambridge, MGI (Mouse Genome Informatics)
Organism(s) covered:
Mus musculus
Description:
A database of integrated mouse data from MGI, powered by InterMine. MouseMine is member of InterMOD,...
Database maintenance site:
NIH (National Institutes of Health)
Organism(s) covered:
Mus musculus
Description:
The Candidate Cancer Gene Database (CCGD) was developed to disseminate the results of transposon-bas...
Database maintenance site:
Organism(s) covered:
All
Description:
The Environmental Data Initiative is an NSF-funded project meant to accelerate curation and archive ...
Database maintenance site:
Pasteur Institute of Morocco
Organism(s) covered:
Homo sapiens
Description:
The Moroccan Genetic Disease Database (MGDD) collect and document mutations and frequencies of polym...
Database maintenance site:
Organism(s) covered:
All
Description:
KiMoSys is a user-friendly platform that includes a public data repository of relevant published mea...
Database maintenance site:
Organism(s) covered:
Bos taurus | Danio rerio | Drosophila melanogaster | Homo sapiens | Mus musculus | ...
Description:
The ESTs and mRNAs from GenBank have been used to identify chimeric RNAs of two or more different ge...