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Server update on March 19, 2025.
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List of Database Records (records: 2170)
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Database maintenance site:
KOBIC(Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology)
Organism(s) covered:
Homo sapiens
Description:
Human Integrated Pathway Database (hiPathDB) provides two different types of integration. The pathwa...
Database maintenance site:
Theoretical Biology and Biophysics, T-10, Los Alamos National Laboratory
Organism(s) covered:
Nairovirus | Viruses | Zika virus
Description:
The Ebola and Hemorrhagic Fever Virus Database stems from the Hemorrhagic Fever Viruses (HFV) Databa...
Database maintenance site:
UMD (Universal Mutations Database)
Organism(s) covered:
Homo sapiens
Description:
BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory o...
Database maintenance site:
Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR)
Organism(s) covered:
Arenaviridae | Bunyaviridae | Coronaviridae | Filoviridae | Flaviviridae | ...
Description:
VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral gen...
Database maintenance site:
IBI (Institute for Biomedical Informatics, University of Pennsylvania), Diana Lab Group, BSRC (Biomedical Sciences Research Center Alexander Fleming)
Organism(s) covered:
Arabidopsis thaliana | Bombyx mori | Bos taurus | Caenorhabditis elegans | Danio rerio | ...
Description:
DIANA-TarBase is a reference database that indexes experimentally-supported microRNA (miRNA) targets...
Database maintenance site:
The Federal Research Center Institute of Cytology and Genetics Lab, Novosibirsk State University
Organism(s) covered:
Anopheles gambiae | Ascaris suum | Bos taurus | Caenorhabditis elegans | Canis familiaris | ...
Description:
SitEx is a database containing information on eukaryotic protein functional sites. It stores the ami...
Database maintenance site:
McDonnell Genome Institute at Washington University School of Medicine, Genome Technology Access Center, Department of Genetics, Washington University School of Medicine
Organism(s) covered:
Ancylostoma caninum | Ancylostoma ceylanicum | Ancylostoma duodenale | Ascaris suum | Brugia malayi | ...
Description:
Nematode.net is the home page of the parasitic nematode EST project at The Genome Institute at Washi...
Database maintenance site:
Organism(s) covered:
Metazoa | Placozoa
Description:
MitoZoa is a specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA e...
Database maintenance site:
Columbia University
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
This resource details DNA methylation profiles in human and mouse brain. This database includes geno...
Database maintenance site:
Systems Biology Laboratory of Gwangju Institute of Science and Technology, Department of Life Sciences
Organism(s) covered:
Homo sapiens
Description:
iPAVS provides a collection of highly-structured manually curated human pathway data, it also integr...
Database maintenance site:
University of Hong Kong
Organism(s) covered:
Homo sapiens
Description:
GWASdb comprises of collections of traits/diseases associated SNP (TASs) from current GWAS and their...
Database maintenance site:
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute
Organism(s) covered:
Vertebrata
Description:
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated...
Database maintenance site:
Institute for Microbial Technology
Organism(s) covered:
All
Description:
ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for...
Database maintenance site:
Wishart Lab, University of Alberta
Organism(s) covered:
Archaea | Bacteria
Description:
BacMap is a picture atlas of annotated bacterial genomes. It is an interactive visual database conta...
Database maintenance site:
Mayo Clinic
Organism(s) covered:
Danio rerio
Description:
Zfishbook is a real-time database of transposon-labeled mutants in zebrafish. This resource provides...
Database maintenance site:
BIOTEC (The Biotechnology Center, Technische Universitat Dresden), EMBO (European Molecular Biology Organization), University of Copenhagen
Organism(s) covered:
All
Description:
STITCH is a resource to explore known and predicted interactions of chemicals and proteins. Chemical...
Database maintenance site:
KOBIC(Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology)
Organism(s) covered:
All
Description:
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinement...
Database maintenance site:
Switch Laboratory
Organism(s) covered:
Homo sapiens
Description:
SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect prim...
Database maintenance site:
Jurisica Lab, Ontario Cancer Institute
Organism(s) covered:
All
Description:
SCRIPDB is a chemical structure database designed to make patent metadata accessible. We index publi...
Database maintenance site:
Yale University, Yale University School of Medicine
Organism(s) covered:
All
Description:
ModelDB provides an accessible location for storing and efficiently retrieving computational neurosc...
Database maintenance site:
Organism(s) covered:
All
Description:
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic sear...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reaction...
Database maintenance site:
School of Computer Science and Engineering, The Hebrew University of Jerusalem
Organism(s) covered:
All
Description:
This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. Thi...
Database maintenance site:
Cell Networks, University of Heidelberg
Organism(s) covered:
All
Description:
Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structur...
Database maintenance site:
New England Biolabs
Organism(s) covered:
All
Description:
Polbase is an open and searchable database providing information from published and unpublished sour...
Database maintenance site:
The Abagyan Lab UC San Diego, UCSD (University of California San Diego)
Organism(s) covered:
All
Description:
The Pocketome is an encyclopedia of conformational ensembles of druggable binding sites that can be ...
Database maintenance site:
USDA-ARS (Agricultural Research Service of the US Department of Agriculture), Iowa State University
Organism(s) covered:
Fungi | Nematoda | Oomycetes | Sinorhizobium meliloti | Viridiplantae
Description:
PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathog...
Database maintenance site:
Ming Chen's Lab, Zhejiang University
Organism(s) covered:
Viridiplantae
Description:
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes ...
Database maintenance site:
Bioinformatics and Computational Biology Program, Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology (BBMB), Iowa State University
Organism(s) covered:
Arabidopsis thaliana
Description:
Arabidopsis metabolomics database which provides researchers with resources to investigate the funct...
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description:
Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interacti...
Database maintenance site:
Banting and Best Department of Medical Research, The Donnelly Centre, University of Toronto
Organism(s) covered:
Saccharomyces cerevisiae
Description:
PhenoM (Phenomics of yeast Mutants) stores, retrieves, visualises and data mines the quantitative si...
Database maintenance site:
MGAN (Microbial Genome Annotation Network)
Organism(s) covered:
Bacteria
Description:
GENI-ACT is a resource that allows the research community to collaboratively annotate bacterial geno...
Database maintenance site:
Bioinformatics and ECCPS bioinformatics service group, Max Planck Institute for Heart and Lung Research
Organism(s) covered:
Notophthalmus viridescens
Description:
A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from h...
Database maintenance site:
Gautheret Lab, Institute for Integrative Biology of the Cell
Organism(s) covered:
Archaea | Bacteria
Description:
The Network of Cancer Genes (NCG) contains information on duplicability, evolution, protein-protein ...
Database maintenance site:
The Jackson Laboratory, Bar Harbor
Organism(s) covered:
Mus musculus
Description:
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries ...
Database maintenance site:
LBNL (Lawrence Berkeley National Laboratory), InterMine, System Biology Centre
Organism(s) covered:
Caenorhabditis elegans | Drosophila ananassae | Drosophila melanogaster | Drosophila mojavensis | Drosophila pseudoobscura | ...
Description:
modMine is an integrated web resource of data and tools to browse and search modENCODE data and expe...
Database maintenance site:
MBU (MRC Mitochondrial Biology Unit, Cambridge, UK)
Organism(s) covered:
Eukaryota
Description:
MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and disease...
Database maintenance site:
ELIXIR, Wellcome Genome Campus, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The Identifiers.org Central Registry provides the necessary information for the generation and resol...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
mirEX2 is a comprehensive platform for comparative analysis of primary microRNA expression data. RT–...
Database maintenance site:
IIT Kanpur (Indian Institute of Technology Kanpur)
Organism(s) covered:
All
Description:
This is a database of comparative protein structure models of the MIP (Major Intrinsic Protein) fami...
Database maintenance site:
Department of Biology, University of Rome Tor Vergata
Organism(s) covered:
All
Description:
MINT focuses on experimentally verified protein-protein interactions mined from the scientific liter...
Database maintenance site:
UZH Chemistry (Department of Chemistry, University of Zurich)
Organism(s) covered:
All
Description:
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of...
Database maintenance site:
HLAB (Huang's Lab)
Organism(s) covered:
All
Description:
Mimotope database, active site-mimicking peptides selected from phage-display libraries. It is a dat...
Database maintenance site:
IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:
Arabidopsis thaliana | Beta vulgaris | Brassica napus | Hordeum vulgare | Medicago truncatula | ...
Description:
The MetaCrop resource contains information on the major metabolic pathways mainly in crops of agricu...
Database maintenance site:
University of Florida
Organism(s) covered:
Drosophila melanogaster | Homo sapiens | Mus musculus
Description:
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 ...
Database maintenance site:
Zhao Bioinformatics Laboratory
Organism(s) covered:
Lotus japonicus | Medicago truncatula
Description:
The LegumeIP database stores information on translational genomics, targeting the discovery of novel...
Database maintenance site:
CNRS (The National Centre for Scientific Research)
Organism(s) covered:
All
Description:
Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the s...
Database maintenance site:
State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University
Organism(s) covered:
Bacteria
Description:
A web-based resource for integrative and conjugative elements (ICEs) found in bacteria. It collates ...
Database maintenance site:
Center for Computational Biology and Bioinformatics and College of Engineering (CCBB), Koc University (KU)
Organism(s) covered:
All
Description:
Database of interaction Hotspots across the proteome. Hot spots are energetically important residues...
Database maintenance site:
University of Bari
Organism(s) covered:
Homo sapiens
Description:
HmtDB is an open resource created to support population genetics and mitochondrial disease studies. ...