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List of Database Records (records: 2182)
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Organism covered
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Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
Rhea is a comprehensive and non-redundant resource of expert-curated chemical and transport reaction...
Database maintenance site:
School of Computer Science and Engineering, The Hebrew University of Jerusalem
Organism(s) covered:
All
Description:
This resource is a hierarchical clustering of UniProt protein sequences into hierarchical trees. Thi...
Database maintenance site:
Cell Networks, University of Heidelberg
Organism(s) covered:
All
Description:
Protein-Chemical Structural Interactions provides information on the 3-dimensional chemical structur...
Database maintenance site:
New England Biolabs
Organism(s) covered:
All
Description:
Polbase is an open and searchable database providing information from published and unpublished sour...
Database maintenance site:
The Abagyan Lab UC San Diego, UCSD (University of California San Diego)
Organism(s) covered:
All
Description:
The Pocketome is an encyclopedia of conformational ensembles of druggable binding sites that can be ...
Suspend
PLEXdb
Database maintenance site:
USDA-ARS (Agricultural Research Service of the US Department of Agriculture), Iowa State University
Organism(s) covered:
Fungi | Nematoda | Oomycetes | Sinorhizobium meliloti | Viridiplantae
Description:
PLEXdb (Plant Expression Database) is a unified gene expression resource for plants and plant pathog...
Database maintenance site:
Ming Chen's Lab, Zhejiang University
Organism(s) covered:
Viridiplantae
Description:
Natural Antisense Transcripts (NATs), a kind of regulatory RNAs, occur prevalently in plant genomes ...
Suspend
Plantmetabolomics.org
Database maintenance site:
Bioinformatics and Computational Biology Program, Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology (BBMB), Iowa State University
Organism(s) covered:
Arabidopsis thaliana
Description:
Arabidopsis metabolomics database which provides researchers with resources to investigate the funct...
Database maintenance site:
Organism(s) covered:
Caenorhabditis elegans | Drosophila melanogaster | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description:
Protein Interaction Network Analysis (PINA) platform is an integrated platform for protein interacti...
Database maintenance site:
Banting and Best Department of Medical Research, The Donnelly Centre, University of Toronto
Organism(s) covered:
Saccharomyces cerevisiae
Description:
PhenoM (Phenomics of yeast Mutants) stores, retrieves, visualises and data mines the quantitative si...
Database maintenance site:
Bioinformatics and ECCPS bioinformatics service group, Max Planck Institute for Heart and Lung Research
Organism(s) covered:
Notophthalmus viridescens
Description:
A comprehensive repository for omics data from the red spotted newt Notophthalmus viridescens from h...
Database maintenance site:
Gautheret Lab, Institute for Integrative Biology of the Cell
Organism(s) covered:
Archaea | Bacteria
Description:
The Network of Cancer Genes (NCG) contains information on duplicability, evolution, protein-protein ...
Database maintenance site:
The Jackson Laboratory, Bar Harbor
Organism(s) covered:
Mus musculus
Description:
Characterizations of hundreds of strains of laboratory mice to facilitate translational discoveries ...
Database maintenance site:
LBNL (Lawrence Berkeley National Laboratory), InterMine, System Biology Centre
Organism(s) covered:
Caenorhabditis elegans | Drosophila ananassae | Drosophila melanogaster | Drosophila mojavensis | Drosophila pseudoobscura | ...
Description:
modMine is an integrated web resource of data and tools to browse and search modENCODE data and expe...
Database maintenance site:
MBU (MRC Mitochondrial Biology Unit, Cambridge, UK)
Organism(s) covered:
Eukaryota
Description:
MitoMiner is an integrated data warehouse of mammalian localisation evidence, phenotypes and disease...
Database maintenance site:
ELIXIR, Wellcome Genome Campus, SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The Identifiers.org Central Registry provides the necessary information for the generation and resol...
Database maintenance site:
Wellcome Sanger Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
mirEX2 is a comprehensive platform for comparative analysis of primary microRNA expression data. RT–...
Database maintenance site:
Department of Biology, University of Rome Tor Vergata
Organism(s) covered:
All
Description:
MINT focuses on experimentally verified protein-protein interactions mined from the scientific liter...
Database maintenance site:
UZH Chemistry (Department of Chemistry, University of Zurich)
Organism(s) covered:
All
Description:
MINAS contains the exact geometric information on the first and second-shell coordinating ligands of...
Suspend
Mimotope Database: MimoDB
Database maintenance site:
HLAB (Huang's Lab)
Organism(s) covered:
All
Description:
Mimotope database, active site-mimicking peptides selected from phage-display libraries. It is a dat...
Database maintenance site:
IPK (Leibniz Institute of Plant Genetics and Crop Plant Research)
Organism(s) covered:
Arabidopsis thaliana | Beta vulgaris | Brassica napus | Hordeum vulgare | Medicago truncatula | ...
Description:
The MetaCrop resource contains information on the major metabolic pathways mainly in crops of agricu...
Database maintenance site:
University of Florida
Organism(s) covered:
Drosophila melanogaster | Homo sapiens | Mus musculus
Description:
This resource provides information primarily on the upstream non-coding sequence data of genes in 3 ...
Database maintenance site:
Zhao Bioinformatics Laboratory
Organism(s) covered:
Lotus japonicus | Medicago truncatula
Description:
The LegumeIP database stores information on translational genomics, targeting the discovery of novel...
Database maintenance site:
CNRS (The National Centre for Scientific Research)
Organism(s) covered:
All
Description:
Evolution of protein-protein Interfaces InterEvol is a resource for researchers to investigate the s...
Database maintenance site:
State Key Laboratory of Microbial Metabolism, Shanghai Jiaotong University
Organism(s) covered:
Bacteria
Description:
A web-based resource for integrative and conjugative elements (ICEs) found in bacteria. It collates ...
Database maintenance site:
Center for Computational Biology and Bioinformatics and College of Engineering (CCBB), Koc University (KU)
Organism(s) covered:
All
Description:
Database of interaction Hotspots across the proteome. Hot spots are energetically important residues...
Database maintenance site:
University of Bari
Organism(s) covered:
Homo sapiens
Description:
HmtDB is an open resource created to support population genetics and mitochondrial disease studies. ...
Database maintenance site:
ACTREC (Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre)
Organism(s) covered:
Homo sapiens
Description:
HIstome (Human histone database) is a freely available, specialist, electronic database dedicated to...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
HaploReg is a tool for exploring annotations of the noncoding genome at variants on haplotype blocks...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
All
Description:
The Expression Atlas is a free resource providing information on gene expression patterns under diff...
Database maintenance site:
Organism(s) covered:
All
Description:
A resource for exploring the evolution of protein function through relationships in sequence, struct...
Database maintenance site:
CBIL (Computational Biology and Informatics Laboratory, University of Pennsylvania), Center for Tropical & Emerging Global Diseases, University of Georgia, United States Department of Health and Human Services
Organism(s) covered:
Fungi | Oomycetes
Description:
FungiDB is an integrated genomic and functional genomic database for the kingdom Fungi. The database...
Database maintenance site:
Stockholm Bioinformatics Center
Organism(s) covered:
Arabidopsis thaliana | Caenorhabditis elegans | Canis familiaris | Ciona intestinalis | Danio rerio | ...
Description:
FunCoup is a framework to infer genome-wide functional couplings in 11 model organisms. Functional c...
Database maintenance site:
Howard Hughes Medical Institute, Harvard Medical School
Organism(s) covered:
Drosophila melanogaster
Description:
DRSC Functional Genomics Resources (DRSC-FGR) began as the Drosophila RNAi Screening Center (DRSC), ...
Database maintenance site:
Mayo Clinic, Scottsdale, MIT (Massachusetts Institute of Technology)
Organism(s) covered:
All
Description:
Thermodynamics calculator for biochemical reactions. eQuilibrator is a simple web interface designed...
Database maintenance site:
Genomics Institute, University of California
Organism(s) covered:
Caenorhabditis | Drosophila | Homo sapiens | Mus musculus
Description:
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research g...
Database maintenance site:
Universitetet i Bergen
Organism(s) covered:
Eukaryota
Description:
This computational biology resource mainly focuses on annotation and detection of eukaryotic linear ...
Database maintenance site:
Organism(s) covered:
Description:
eggNOG (evolutionary genealogy of genes: Non-supervised Orthologous Groups) is a database of ortholo...
Database maintenance site:
Texas A&M University
Organism(s) covered:
Escherichia coli
Description:
EcoliWiki is a community-based resource for the annotation of all non-pathogenic E. coli, its phages...
Database maintenance site:
Structural Biology and Bioinformatics Division Indian Institute of Chemical Biology
Organism(s) covered:
Actinobacillus | Aeromonas | Arcanobacterium | Bacillus | Bordetella | ...
Description:
DBETH is the Database of Bacterial Exotoxins for Human. The aim of this database is to assemble info...
Database maintenance site:
European Medicines Agency
Organism(s) covered:
Description:
EudraCT (European Union Drug Regulating Authorities Clinical Trials) is the European Clinical Trials...
Database maintenance site:
ORCID (Open Research and Contributor ID Initiative)
Organism(s) covered:
Description:
ORCID is an open, non-profit, community-driven effort to create and maintain a registry of unique re...
Database maintenance site:
Organism(s) covered:
Description:
GESDB is a platform for sharing simulation data and discussion of simulation techniques for human ge...
Database maintenance site:
University of California
Organism(s) covered:
All
Description:
BiGG Models is a knowledgebase of genome-scale metabolic network reconstructions. BiGG Models integr...
Database maintenance site:
AgBase, Mississippi State University
Organism(s) covered:
All
Description:
HPIDB 3.0 is a resource that helps annotate, predict and display host-pathogen interactions (HPI). H...
Database maintenance site:
Universiteit Stellenbosch
Organism(s) covered:
All
Description:
JWS Online is a Systems Biology tool for the construction, modification and simulation of kinetic mo...
Database maintenance site:
Labome
Organism(s) covered:
All
Description:
Labome organizes reagent information from high quality suppliers. The reagents include antibodies, s...
Database maintenance site:
ELIXIR, Wellcome Genome Campus, URGI, transplant
Organism(s) covered:
Agaricus subrefescens | Arabidopsis thaliana | Arabis alpina | Botrytis cinerea B0510 | Botrytis cinerea T4 | ...
Description:
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridge...
Database maintenance site:
HITS (Heidelberg Institute for Theoretical Studies), University of Manchester
Organism(s) covered:
All
Description:
The FAIRDOMHub is a publicly available repository build using the SEEK software, which enables colla...
Database maintenance site:
Auckland Bioengineering Institute
Organism(s) covered:
All
Description:
The Physiome Model Repository (PMR) is the main online repository for the IUPS Physiome Project, pro...