Database Record
MSigDB: Molecular Signatures Database
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02550 | ||||
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| Database nameName of the database | MSigDB | ||||
| Alternative nameAlternative name of the database | Molecular Signatures Database | ||||
| URLURL of the database | http://www.gsea-msigdb.org/gsea/msigdb/index.jsp | ||||
| Database maintenance siteSite maintaining the database | Broad Institute of Harvard and MIT, UCSD (University of California San Diego) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | United States | ||||
| Database descriptionDatabase descirption | MSigDB is a collection of annotated gene sets for use with Enrichment Analysis (GSEA) software which is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states. It contains 9 major collections of the gene sets; H: hallmark gene sets C1: positional gene sets C2: curated gene sets C3: regulatory target gene sets C4: computational gene sets C5: ontology gene sets C6: oncogenic signature gene sets C7: immunologic signature gene sets C8: cell type signature gene sets | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://www.gsea-msigdb.org/gsea/login.jsp#msigdb | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | http://www.gsea-msigdb.org/gsea/license_terms_list.jsp | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | http://www.gsea-msigdb.org/gsea/contact.jsp | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2020-12-23 | ||||
| Last update date of this recordLast update date of this English record | 2020-12-23 | ||||
| Record license | Creative Commons CC0 license |