Database Record
Inactive
DAnCER: Disease Annotated Chromatin Epigenetics Resource
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01617 | ||||
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| Database nameName of the database | DAnCER | ||||
| Alternative nameAlternative name of the database | Disease Annotated Chromatin Epigenetics Resource | ||||
| URLURL of the database | http://wodaklab.org/dancer/ | ||||
| Database maintenance siteSite maintaining the database | SickKids (The Hospital for Sick Children) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Canada | ||||
| Database descriptionDatabase descirption | DAnCER is a database which integrates information on genes with chromatin modification (CM) function from five model organisms, including human. Currently integrated information on this database are gene functional annotations, Pfam domain architecture, protein interaction networks and associated human diseases. Additional supporting evidence includes orthology relationships across organisms, membership in protein complexes, and information on protein 3D structure. These data are available for 962 CM genes which are experimentally confirmed and manually curated and for over 5000 genes with predicted CM function on the basis of orthology and domain composition. DAnCER provides visual explorations of the integrated data and flexible query capabilities using a variety of data filters. Particularly, disease information and functional annotations are mapped onto the protein interaction networks, enabling the user to formulate new hypotheses on the function and disease associations of a given gene based on those of its interaction partners. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090), Drosophila melanogaster (7227), Caenorhabditis elegans (6239), Saccharomyces cerevisiae (4932) | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||
| Operational statusOperational status for the database | Inactive | ||||
| Link(s) to Downloadable dataLinks to downloadable data | http://wodaklab.org/dancer/downloads/ | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2016-09-05 | ||||
| Last update date of this recordLast update date of this English record | 2016-09-05 | ||||
| Record license | Creative Commons CC0 license |