Database Record
Dfam
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC01595 | ||||||||
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| Database nameName of the database | Dfam | ||||||||
| Alternative nameAlternative name of the database | ― | ||||||||
| URLURL of the database | http://dfam.org | ||||||||
| Database maintenance siteSite maintaining the database | University of Montana | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | United States | ||||||||
| Database descriptionDatabase descirption | This database is a collection of Repetitive DNA element sequence alignments, hidden Markov models (HMMs) and match lists for complete Eukaryotic genomes. It provides information about each model, and genome annotations for a collection of core genomes. Sequence alignments, profile HMMs, hit lists, and other underlying data are available for download. | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Homo sapiens (9606), Mus musculus (10090), Danio rerio (7955), Nematoda (6231), Drosophila (7215) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||
| Operational statusOperational status for the database | Active | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | http://dfam.org/web_download/ | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | http://dfam.org/web_download/Current_Release/userman.txt | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | http://dfam.org/web_download/Current_Release/relnotes.txt | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/biodbcore-000165 | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2016-05-31 | ||||||||
| Last update date of this recordLast update date of this English record | 2016-05-31 | ||||||||
| Record license | Creative Commons CC0 license |