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List of Database Records (records: 2182)
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Organism covered
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Database maintenance site:
Churchill Group, The Jackson Laboratory, IGMM (MRC Institute of Genetics & Molecular Medicine, University of Edinburgh)
Organism(s) covered:
Mus musculus
Description:
The e-Mouse Atlas of Gene Expression (EMAGE) is a freely available database of in situ gene expressi...
Database maintenance site:
Churchill Group, The Jackson Laboratory, IGMM (MRC Institute of Genetics & Molecular Medicine, University of Edinburgh)
Organism(s) covered:
Mus musculus
Description:
The e-Mouse Atlas (EMA) is a detailed model of the developing mouse. Its purpose is not only to prov...
Database maintenance site:
Organism(s) covered:
Danio rerio | Drosophila | Homo sapiens | Mus musculus | Rattus norvegicus | ...
Description:
Gemma is a database for the meta-analysis, re-use and sharing of genomics data, currently primarily ...
Database maintenance site:
STRENDA Commission
Organism(s) covered:
All
Description:
STRENDA DB is a storage and search platform supported by the Beilstein-Institut that incorporates th...
Database maintenance site:
eNanoMapper
Organism(s) covered:
Description:
data.eNanoMapper.net is a public database hosting nanomaterials characterization data and biological...
Database maintenance site:
SIB (Swiss Institute of Bioinformatics)
Organism(s) covered:
Animalia | Archaea | Bacteria | Fungi | Viridiplantae
Description:
MetaNetX/MNXref is a database for reconciliation of metabolites and biochemical reactions to bring t...
Database maintenance site:
Francis Crick Institute
Organism(s) covered:
Mus musculus
Description:
Initiated in 2013, DMDD has the ambitious goal of identifying all embryonic lethal knockout lines ma...
Database maintenance site:
Organism(s) covered:
Homo sapiens
Description:
The Type 2 Diabetes Knowledge Portal is an open-access resource for human genetic information on typ...
Database maintenance site:
Organism(s) covered:
Caenorhabditis | Drosophila | Homo sapiens | Mus musculus
Description:
The ENCODE (Encyclopedia of DNA Elements) Consortium is an international collaboration of research g...
Database maintenance site:
IFC-CNR (Institute of Clinical Physiology), Icahn School of Medicine at Mount Sinai, ITT (Institute of Informatics and Telematics, National Research Council), Ohio State University, University of Catania
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
The miRandola database is the first resource for extracellular circulating RNAs. The first version o...
Database maintenance site:
Genomics England
Organism(s) covered:
Homo sapiens
Description:
Genomics England PanelApp is a publically-available knowledgebase that allows virtual gene panels re...
Database maintenance site:
FDA (United States Food and Drug Administration)
Organism(s) covered:
Homo sapiens
Description:
The Global Unique Device Identification Database (GUDID - pronounced "Good ID") is a database admini...
Database maintenance site:
Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB)
Organism(s) covered:
Aquifex aeolicus | Arabidopsis thaliana | Archaeoglobus fulgidus | Bacillus subtilis | Chlorobium tepidum | ...
Description:
MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates i...
Database maintenance site:
iSCB (Laboratory of Integrative Structural & Chemical Biology)
Organism(s) covered:
All
Description:
The Protein Protein Interaction Inhibition Database (2P2Idb) is a hand-curated structural database d...
Database maintenance site:
North Carolina State University
Organism(s) covered:
Bos taurus | Caenorhabditis elegans | Canis lupus | Danio rerio | Eumetazoa | ...
Description:
The Comparative Toxicogenomics Database (CTD) advances understanding of the effects of environmental...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute), HLA Informatics Group, Anthony Nolan Research Institute
Organism(s) covered:
All
Description:
The Immuno Polymorphism Database (IPD), was developed in 2003 to provide a centralised system for th...
Database maintenance site:
IBMP (Plant Molecular Biology Institute)
Organism(s) covered:
Arabidopsis thaliana | Brachypodium distachyon | Chlamydomonas reinhardtii | Cyanophora paradoxa | Ectocarpus siliculosus | ...
Description:
The PlantRNA database compiles tRNA gene sequences retrieved from fully annotated plant nuclear, pla...
Database maintenance site:
Cambridge Systems Biology Centre, University of Cambridge, EMBL (European Molecular Biology Laboratory)
Organism(s) covered:
All
Description:
MetaboLights is a database is a collection of metabolite structures. This resource provides informat...
Database maintenance site:
Division Signaling and Functional Genomics, German Cancer Research Center (DKFZ) and University of Heidelberg
Organism(s) covered:
Drosophila melanogaster | Homo sapiens
Description:
The GenomeRNAi database collects RNAi phenotypes recorded in the literature for Homo sapiens and Dro...
Database maintenance site:
Fiona Brinkman Laboratory, Simon Fraser University
Organism(s) covered:
Archaea | Bacteria
Description:
OrtholugeDB contains Ortholuge-based orthology predictions for completely sequenced bacterial and ar...
Database maintenance site:
Shanghai Jiao Tong University
Organism(s) covered:
Bacteria
Description:
A web-based bacterial type IV secretion system resource for type IV secretion systems (T4SSs) and co...
Database maintenance site:
Organism(s) covered:
Aedes aegypti | Anopheles gambiae | Arabidopsis thaliana | Bos taurus | Caenorhabditis elegans | ...
Description:
PTMCode is a resource of known and predicted functional associations between protein post-translatio...
Database maintenance site:
Institute of Integrative Biology, University of Liverpool
Organism(s) covered:
Caenorhabditis briggsae | Caenorhabditis elegans | Danio rerio | Drosophila melanogaster | Homo sapiens | ...
Description:
The Human Ageing Genomic Resources (HAGR) is a collection of databases and tools for the biology and...
Database maintenance site:
Organism(s) covered:
Saccharomyces cerevisiae
Description:
The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites fo...
Database maintenance site:
Universiteit Maastricht, Gladstone Institutes
Organism(s) covered:
Anopheles gambiae | Arabidopsis thaliana | Bacillus subtilis | Bos taurus | Caenorhabditis elegans | ...
Description:
WikiPathways is an open, collaborative platform dedicated to the curation of biological pathways. Wi...
Database maintenance site:
JCVI (J. Craig Venter Institute), Northrop Grumman Health IT, Vecna Technologies
Organism(s) covered:
Arenaviridae | Bunyaviridae | Caliciviridae | Coronaviridae | Filoviridae | ...
Description:
The Virus Pathogen Database and Analysis Resource (ViPR) is an integrated repository of data and ana...
Database maintenance site:
Department of Biomolecular Engineering, University of California Santa Cruz, Center for Biomolecular Science and Engineering, School of Engineering, University of California Santa Cruz, University of California
Organism(s) covered:
Archaea | Plasmodium falciparum
Description:
The UCSC Archaeal Genome Browser is a window on the biology of more than 100 microbial species from ...
Database maintenance site:
National University of Singapore
Organism(s) covered:
All
Description:
The Therapeutic Target Database provides information about therapeutic protein and nucleic acid targ...
Database maintenance site:
Organism(s) covered:
Arabidopsis thaliana | Escherichia coli | Homo sapiens | Mus musculus | Saccharomyces cerevisiae
Description:
The Termini-Oriented Protein Function INferred Database (TopFIND) is an integrated knowledgebase foc...
Database maintenance site:
Organism(s) covered:
Prochlorococcus marinus | Synechococcus | unclassified T4virus | unclassified Myoviridae | unclassified dsDNA phages | ...
Description:
ProPortal is a database containing genomic, metagenomic, transcriptomic and field data for the marin...
Database maintenance site:
Organism(s) covered:
Archaea | Bacteria
Description:
The Prokaryotic Operon DataBase (ProOpDB) constitutes one of the most precise and complete repositor...
Database maintenance site:
Center for Computational and Integrative Biology
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
PrimerBank is a public resource for PCR primers. These primers are designed for gene expression dete...
Database maintenance site:
KOBIC(Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology)
Organism(s) covered:
Homo sapiens
Description:
Human Integrated Pathway Database (hiPathDB) provides two different types of integration. The pathwa...
Database maintenance site:
UMD (Universal Mutations Database)
Organism(s) covered:
Homo sapiens
Description:
BRCA Share is a novel gene datashare initiative that provides scientists and commercial laboratory o...
Database maintenance site:
Bioinformatics Centre, Institute of Microbial Technology, Council of Scientific and Industrial Research (CSIR)
Organism(s) covered:
Arenaviridae | Bunyaviridae | Coronaviridae | Filoviridae | Flaviviridae | ...
Description:
VIRsiRNAdb contains information on experimentally validated Viral siRNA/shRNA which target viral gen...
Database maintenance site:
IBI (Institute for Biomedical Informatics, University of Pennsylvania), Diana Lab Group, BSRC (Biomedical Sciences Research Center Alexander Fleming)
Organism(s) covered:
Arabidopsis thaliana | Bombyx mori | Bos taurus | Caenorhabditis elegans | Danio rerio | ...
Description:
DIANA-TarBase is a reference database that indexes experimentally-supported microRNA (miRNA) targets...
Database maintenance site:
The Federal Research Center Institute of Cytology and Genetics Lab, Novosibirsk State University
Organism(s) covered:
Anopheles gambiae | Ascaris suum | Bos taurus | Caenorhabditis elegans | Canis familiaris | ...
Description:
SitEx is a database containing information on eukaryotic protein functional sites. It stores the ami...
Database maintenance site:
McDonnell Genome Institute at Washington University School of Medicine, Genome Technology Access Center, Department of Genetics, Washington University School of Medicine
Organism(s) covered:
Ancylostoma caninum | Ancylostoma ceylanicum | Ancylostoma duodenale | Ascaris suum | Brugia malayi | ...
Description:
Nematode.net is the home page of the parasitic nematode EST project at The Genome Institute at Washi...
Database maintenance site:
Organism(s) covered:
Metazoa | Placozoa
Description:
MitoZoa is a specialized database collecting complete and nearly-complete (longer than 7 kb) mtDNA e...
Database maintenance site:
Columbia University
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
This resource details DNA methylation profiles in human and mouse brain. This database includes geno...
Suspend
Integrated Pathway Analysis and Visualization System: IPAVS
Database maintenance site:
Systems Biology Laboratory of Gwangju Institute of Science and Technology, Department of Life Sciences
Organism(s) covered:
Homo sapiens
Description:
iPAVS provides a collection of highly-structured manually curated human pathway data, it also integr...
Database maintenance site:
University of Hong Kong
Organism(s) covered:
Homo sapiens
Description:
GWASdb comprises of collections of traits/diseases associated SNP (TASs) from current GWAS and their...
Database maintenance site:
Evolution of Protein Structure and Function Group, Biomolecular Modelling and Design Division, Bioinformatics Institute
Organism(s) covered:
Vertebrata
Description:
Detection of functional divergence in human protein families. Cube-DB is a database of pre-evaluated...
Database maintenance site:
Institute for Microbial Technology
Organism(s) covered:
All
Description:
ccPDB (Compilation and Creation of datasets from PDB) is a collection of commonly used data sets for...
Database maintenance site:
Wishart Lab, University of Alberta
Organism(s) covered:
Archaea | Bacteria
Description:
BacMap is a picture atlas of annotated bacterial genomes. It is an interactive visual database conta...
Database maintenance site:
KOBIC(Korean Bioinformation Center, Korea Research Institute of Bioscience and Biotechnology)
Organism(s) covered:
All
Description:
The STAP database contains refined versions of the NMR structures deposited in PDB. These refinement...
Database maintenance site:
Switch Laboratory
Organism(s) covered:
Homo sapiens
Description:
SNPeffect is a database for phenotyping human single nucleotide polymorphisms (SNPs). SNPeffect prim...
Database maintenance site:
Jurisica Lab, Ontario Cancer Institute
Organism(s) covered:
All
Description:
SCRIPDB is a chemical structure database designed to make patent metadata accessible. We index publi...
Database maintenance site:
Yale University, Yale University School of Medicine
Organism(s) covered:
All
Description:
ModelDB provides an accessible location for storing and efficiently retrieving computational neurosc...
Database maintenance site:
Organism(s) covered:
All
Description:
RNA Characterization of Secondary Structure Motifs (RNA CoSSMos) database allows the systematic sear...