Japanese
Menu

Database Record

Thumbnail

UNITE

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC01905
Database nameName of the database UNITE
Alternative nameAlternative name of the database ―
URLURL of the database https://unite.ut.ee/index.php
Database maintenance siteSite maintaining the database University of Tartu
Country/RegionCountry or region name where the database maintenance site is located Australia, Denmark, Estonia, Norway, Sweden, United Kingdom
Database descriptionDatabase descirption UNITE is a database and sequence management environment centered on the eukaryotic nuclear ribosomal ITS region. All eukaryotic ITS sequences from the International Nucleotide Sequence Database Collaboration are clustered to approximately the species level (distance between species in steps of 0.5%), and all such species hypotheses are given a DOI to facilitate unambiguous scientific communication and data assembly. The user can interact with these species hypotheses (e.g., SH1566366.08FU) in various ways, and third-party sequence and metadata annotation are supported. Registration is needed to access the more powerful features of the accompanying PlutoF workbench. A range of search and query options are available, and precompiled reference datasets for local sequence similarity searches and HTS pipelines are available for download. Owing to the mycological roots of UNITE, two versions of the release files are available: all eukaryotes (including fungi), and fungi only. UNITE is a community effort that relies on the scientific expertise of its users - please consider contributing by, e.g., annotating sequences of your taxa of expertise.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Eukaryota (2759), Fungi (4751)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:30371820
DOI:10.1093/nar/gky1022
Language(s)Languages in which the contents of the database are displayed English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data https://unite.ut.ee/repository.php
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data https://unite.ut.ee/index.php
Link(s) to "How to use" ―
Contact information of database https://unite.ut.ee/contact.php
Link(s) to API / SPARQL endpoint https://unite.ut.ee/repository.php
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/10.25504/FAIRsharing.cnwx8c
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer See the corresponding part in the FAIRsharing record
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2019-03-28
Last update date of this recordLast update date of this English record 2024-07-24
Record license Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license