Database Record
MODOMICS
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02129 | ||||||||||||
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| Database nameName of the database | MODOMICS | ||||||||||||
| Alternative nameAlternative name of the database | ― | ||||||||||||
| URLURL of the database | http://modomics.genesilico.pl/ | ||||||||||||
| Database maintenance siteSite maintaining the database | Bujnicki Lab, Laboratory of Bioinformatics and Protein Engineering, International Institute of Molecular and Cell Biology in Warsaw (IIMCB) | ||||||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Poland | ||||||||||||
| Database descriptionDatabase descirption | MODOMICS is the first comprehensive database system for biology of RNA modification. It integrates information about the chemical structure of modified nucleosides, their localization in RNA sequences, pathways of their biosynthesis and enzymes that carry out the respective reactions (together with their protein cofactors). Also included are the protein sequences, the structure data (if available), selected references from scientific literature, and links to other databases allowing to obtain comprehensive information about individual modified residues and proteins involved in their biosynthesis. | ||||||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Aquifex aeolicus (63363), Arabidopsis thaliana (3702), Archaeoglobus fulgidus (2234), Bacillus subtilis (1423), Chlorobium tepidum (1097), Clostridium thermocellum (1515), Enterococcus faecium (1352), Escherichia coli (562), Geobacillus kaustophilus (1462), Geobacter sulfurreducens (35554), Giardia (5740), Haemophilus influenzae (727), Haloferax volcanii (2246), Homo sapiens (9606), Methanocaldococcus jannaschii (2190), Methanopyrus kandleri (2320), Micromonospora zionensis (1879), Mus musculus (10090), Mycobacterium tuberculosis (1773), Mycoplasma capricolum (2095), Nostoc (1177), Pyrococcus abyssi (29292), Pyrococcus furiosus (2261), Pyrococcus horikoshii (53953), Saccharomyces cerevisiae (4932), Salmonella typhimurium (90371), Schizosaccharomyces pombe (4896), Staphylococcus sciuri (1296), Streptococcus pneumoniae (1313), Streptomyces actuosus (1885), Streptomyces cyaneus (1904), Streptomyces fradiae (1906), Streptomyces sp. DSM 40477 (1933), Streptomyces viridochromogenes (1938), Sulfolobus acidocaldarius (2285), Sulfolobus solfataricus (2287), Thermotoga maritima (2336), Thermus thermophilus (274), Trypanosoma brucei (5691), Yersinia pestis (632), Zymomonas mobilis (542) | ||||||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||||||
| Operational statusOperational status for the database | Active | ||||||||||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||||||
| Link(s) to "How to use" | ― | ||||||||||||
| Contact information of database | ― | ||||||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/10.25504/FAIRsharing.3qh2tg | ||||||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||||||
| Record maintainerRecord maintainer | See the corresponding part in the FAIRsharing record | ||||||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2019-03-28 | ||||||||||||
| Last update date of this recordLast update date of this English record | 2020-07-09 | ||||||||||||
| Record license | Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license |