Database Record
KaPPA-View 4: Kazusa Plant Pathway Viewer
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00525 | ||||||||
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| Database nameName of the database | KaPPA-View 4 | ||||||||
| Alternative nameAlternative name of the database | Kazusa Plant Pathway Viewer | ||||||||
| URLURL of the database | http://kpv.kazusa.or.jp/en/ | ||||||||
| Database maintenance siteSite maintaining the database | Kazusa DNA Research Institute (Link to J-Global) | ||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||||||
| Database descriptionDatabase descirption | This web-based tool, KaPPA-View4, represents -omics data on plant metabolic pathway maps that users upload. Differences in gene expressions and metabolite accumulation between samples are visually represented as hue of the gene and metabolite symbols. gene-to-gene and metabolite-to-metabolite relationships, including correlation coefficients of gene co-expressions can be overlayed on the pathway maps. This helps to better understand transcripts and metabolites when examining the roles of genes in the metabolic pathway. The system has been revised, and the processing speed was improved compared to previous versions. Both Windows and Mac OS X are fully supported now and all features of the database are available. Users can use their own metabolic pathway maps for analyses. After uploading DNA microarray or metabolite data, fitting data for each gene or compound is displayed on a metabolic pathway map. | ||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Arabidopsis thaliana (3702), Oryza sativa (4530), Solanum lycopersicum (4081), Lotus japonicus (34305), Glycine max (3847), Hordeum vulgare (4513), Populus (3689), Triticum aestivum (4565), Vitis vinifera (29760), Zea mays (4577) | ||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | Japanese, English | ||||||||
| Operational statusOperational status for the database | Active | ||||||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||||||
| Link(s) to "How to use" | ― | ||||||||
| Contact information of database | ― | ||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||
| Link to MEDALS Database listLink to MEDALS Database list | http://medals.jp/elist/detail/103.html | ||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||||||
| Last update date of this recordLast update date of this English record | 2013-06-17 | ||||||||
| Record license | Creative Commons CC0 license |