Database Record
HATODAS: Heavy-atom Database System
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00490 | ||||
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| Database nameName of the database | HATODAS | ||||
| Alternative nameAlternative name of the database | Heavy-atom Database System | ||||
| URLURL of the database | http://hatodas.harima.riken.jp/ | ||||
| Database maintenance siteSite maintaining the database | RIKEN (The Institute of Physical and Chemical Research) (Link to J-Global) | ||||
| Country/RegionCountry or region name where the database maintenance site is located | Japan | ||||
| Database descriptionDatabase descirption | This database is named HATODAS, meaning Heavy-ATOm DAtabase System. The purpose is to assist the researcher in preparing heavy-atom derivatives of a certain target protein with greater ease. It contains a list of familiar heavy atom derivatives. Whereas, conventionally, derivatives are prepared through a lengthy process of 'hit-or-miss' procedures, searching this collection of data produces a result of suggested heavy-atom reagents for the target protein, determined by its crystallization conditions and amino-acid sequence. Using this database when studying the structure-determining process of target proteins, revealed that 93 particular sequences (motifs) were more often noticed to be present at the actual heavy-atom binding sites. These sequences are therefore perceived to be preferred for successful heavy-atom binding. The site provides a link to the RIKEN Harima Heavy-atom Database. | ||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | ― | ||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | Japanese | ||||
| Operational statusOperational status for the database | Active | ||||
| Link(s) to Downloadable dataLinks to downloadable data | ― | ||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | ― | ||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | ― | ||||
| Link(s) to "How to use" | ― | ||||
| Contact information of database | ― | ||||
| Link(s) to API / SPARQL endpoint | ― | ||||
| Link to LSDB ArchiveLink to LSDB Archive | https://dbarchive.biosciencedbc.jp/jp/hatodas/desc.html | ||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||
| Link to TogoTVLink to TogoTV | ― | ||||
| Link to FAIRsharingLink to FAIRsharing | ― | ||||
| Similar databasesDatabases that are similar to this database. | |||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||
| Last update date of this recordLast update date of this English record | 2022-01-16 | ||||
| Record license | Creative Commons CC0 license |