List of Database Records (records: 2186)
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Database maintenance site:
RIKEN Research Center for Allergy and Immunology
Organism(s) covered:
Mus musculus | Homo sapiens
Description:
RefDIC is a database of immune cell gene expression information with data from mRNA expression exper...
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RED II: Rice Expression Database II
Database maintenance site:
National Institute of Agrobiological Sciences
Organism(s) covered:
Oryza sativa
Description:
Database maintenance site:
University College Cork
Organism(s) covered:
Description:
Recode2 is a database about genes which utilize non-standard translation for gene expression purpose...
Database maintenance site:
New England Biolabs Inc.
Organism(s) covered:
Eukaryota | Bacteria | Archaea | Viruses
Description:
REBASE is a database of restriction enzymes. The database contains entries by publication authors, a...
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RARTF: RIKEN Arabidopsis Transcription Factor database
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
RARTF is a database of Arabidopsis transcription factors grouped into families listed on the front p...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens
Description:
RAPID is a database of mutations leading to immunodeficiency diseases. It has gene and protein infor...
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RAPID: RIKEN Arabidopsis Phenome Information Database
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Arabidopsis thaliana
Description:
RAPID is a database of Arabidopsis phenotypes resulting from transposition events. Users can search ...
Database maintenance site:
CASPUR (Consorzio Interuniversitario per le Applicazioni di Supercalcolo per Universita e Ricerca)
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
Radiation genes is a database of genes whose transcription varies in response to ionizing radiation....
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
PubChem Substance is a database of samples of chemical entities which links to the biological activi...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
PubChem Compound is a database of chemical structrues of validated small molecules. The dataase cont...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
PubChem BioAssay is a database of the biological activity characteristics of various PubChem substan...
Database maintenance site:
University of Pennsylvania
Organism(s) covered:
Saccharomyces cerevisiae
Description:
PTM-Switchboard is a database of known cases of TF-PTMs affecting gene transcriptions. This database...
Database maintenance site:
Simon Fraser University
Organism(s) covered:
Pseudomonas
Description:
Pseudomonas Genome Database is a resource for the completed genome projects of several Pseudomonas s...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
Protein Clusters is a database of related protein families. The database contains clustered protein ...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
NCBI Protein is a collection of amino acid sequences from several sources, including translations fr...
Database maintenance site:
Goteborgs universitet
Organism(s) covered:
Saccharomyces cerevisiae
Description:
PROPHECY is a database of mutant yeast phenotypes. The database contains information on the growth r...
Database maintenance site:
RIKEN CSRS (RIKEN Center for Sustainable Resource Science)
Organism(s) covered:
Description:
PRIMe is a database of metabolomics and transcriptomics with several tools for metabolomic research,...
Database maintenance site:
National Institutes of Biomedical Innovation, Health and Nutrition
Organism(s) covered:
Pan troglodytes
Description:
PRIGEN is a database of chimpanzee cDNA sequences. The database contains sequences from several tiss...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Zinnia violacea
Description:
This database contains information on the way genes are expressed in plants like Zinnia elegans and ...
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Homo sapiens
Description:
This website shows how different human proteins interact with one another.
Information on 32,198 hum...
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Description:
PosMed is a database connecting data of several types, with information about associations between g...
Database maintenance site:
Kazusa DNA Research Institute
Organism(s) covered:
Porphyra yezoensis
Description:
This is a database of Porphyra yezoensis expressed sequences containing consensus gene sequences and...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
Description:
Popset is a database of collected sequences which have been used to determine phylogenetic relation ...
Database maintenance site:
RIKEN BRC (RIKEN BioResource Research Center)
Organism(s) covered:
Populus
Description:
This is a database of Poplar cDNA clones with 5' and 3' sequence information for each clone. Users c...
Database maintenance site:
The University of Tennessee Health Science Center
Organism(s) covered:
Homo sapiens | Mus musculus | Mus musculus
Description:
PolymiRTS is a database of DNA variations which occur naturally in predicted and experimentally iden...
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Plant Repeat Databases
Database maintenance site:
Michigan State University
Organism(s) covered:
Embryophyta
Description:
Plant Repeat Databases is a collection of DNA sequence repeats found in plants. The database consist...
Database maintenance site:
The University of Tokyo The Institute of Medical Science
Organism(s) covered:
Description:
PiSITE is a database of protein interaction domain information containing protein structures annotat...
Database maintenance site:
BGI (Beijing Genomics Institute)
Organism(s) covered:
Sus scrofa
Description:
PigGIS is a database of the pig genome that allows users to browse and search the genome, providing ...
Database maintenance site:
University hospital Medical Information Network
Organism(s) covered:
Homo sapiens
Description:
PicSNP is a database of single nucleotide mutations in the human genome that collects non-synonymous...
Database maintenance site:
Teikyo University Institute of Medical Mycology
Organism(s) covered:
Fungi
Description:
PFDB is a database of research and educational resources related to pathogenic fungi. This database ...
Database maintenance site:
Yamaguchi University Faculty of Science
Organism(s) covered:
Description:
Petri Net Pathways is a database containing models of animated biological pathways.
They are also ex...
Database maintenance site:
NIH (National Institutes of Health)
Organism(s) covered:
Description:
Database maintenance site:
Fred Hutchinson Cancer Research Center
Organism(s) covered:
Homo sapiens | Mus musculus
Description:
PEDB is a database of gene expression and related information specific to prostate cells. The databa...
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PEDB: Mammalian Promoter/Enhancer Database
Database maintenance site:
RIKEN (The Institute of Physical and Chemical Research) Kobe Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus
Description:
PEDB is a database of mammalian promoters and enhancers. The database contains information regarding...
Database maintenance site:
Institute for Systems Biology, University of Cambridge
Organism(s) covered:
Description:
PDDB is a database of prion disease research. The database contains a variety of information pertain...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
All
Description:
PDBe is a database of protein structures. The database is the European resource for the Protein Data...
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PDB-REPRDB: Representative protein chains from PDB
Database maintenance site:
AIST (National Institute of Advanced Industrial Science and Technology)
Organism(s) covered:
Description:
The site contains the same data as the Protein Data Bank (PDB). The information has however been reo...
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PAZAR: A Public Database of Transcription Factor and Regulatory Sequence Annotation
Database maintenance site:
Centre for Molecular Medicine and Therapeutic
Organism(s) covered:
Description:
PAZAR is a database of regulatory sequence information, including information about transcription fa...
Database maintenance site:
Memorial Sloan-Kettering Cancer Center, the University of Toronto
Organism(s) covered:
Eukaryota | Bacteria | Viruses
Description:
Pathguide is a database of biological pathways. The database contains information on hundreds of pat...
Database maintenance site:
EMBL-EBI (European Bioinformatics Institute)
Organism(s) covered:
Description:
PANDIT is a database of protein domain conservation and relationship information. The database conta...
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OriDB: DNA Replication Origin Database
Database maintenance site:
University of Aberdeen Foresterhill
Organism(s) covered:
Saccharomyces cerevisiae
Description:
OriDB is a database of budding yeast origins of replication. The database contains validated origins...
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OmicScan (Integrating MEDLINE and Omics Database)
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Mus musculus | Rattus norvegicus | Caenorhabditis elegans | Arabidopsis thaliana
Description:
Suspend
OmicBrowse
Database maintenance site:
RIKEN Yokohama Institute
Organism(s) covered:
Homo sapiens | Rattus norvegicus | Mus musculus | Caenorhabditis elegans | Arabidopsis thaliana | ...
Description:
Database maintenance site:
Soka University
Organism(s) covered:
Description:
OLIGAMI is a database of protein structure information emphasizing quaternary structure. The databas...
Database maintenance site:
Center for Biological Sequence Analysis, Department of Systems Biology, Technical University of Denmark
Organism(s) covered:
Description:
O-GlycBase is a database of glycosylated proteins. The database contains over two hundred entries of...
Database maintenance site:
NCBI (National Center for Biotechnology Information)
Organism(s) covered:
All
Description:
Nucleotide is a database of nucleic acid sequences. The database contains sequence entities from a v...
Database maintenance site:
University of California, San Francisco, Centre for Molecular and Biomolecular Informatics
Organism(s) covered:
Description:
NucleaRDB is a database of nuclear hormone receptors. The database contains gene and protein sequenc...
Database maintenance site:
Poznan University
Organism(s) covered:
Bacteria | Archaea | Eukaryota
Description:
This database is a collection of information associated with the sequence and function of non-coding...
Database maintenance site:
National Institute of Infectious Diseases
Organism(s) covered:
Nocardia farcinica
Description:
This is the genome database for Nocardia species, which can cause nocardosis in humans. The database...
Database maintenance site:
National Institute of Genetics
Organism(s) covered:
Mus musculus
Description:
This is a database of mouse phenotypes with phenotype information of mutants from a Mus molossinus c...