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Animal Genome Research Program

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC00338
Database nameName of the database Animal Genome Research Program
Alternative nameAlternative name of the database ―
URLURL of the database http://animal.dna.affrc.go.jp/agp/database.html
Database maintenance siteSite maintaining the database NARO (National Agriculture and Food Research Organization) (Link to J-Global)
Country/RegionCountry or region name where the database maintenance site is located Japan
Database descriptionDatabase descirption This is a database of genomic research associated with pigs. It includes DNA markers such as microsatellite markers for pigs, a swine linkage map viewer (ToNMaP), and the Sus scrofa radiation hybrid (SSRH), developed by the Animal Genome Research Program (AGP). Information of full-length cDNA clones and ESTs can also be accessed through this site, as well as those sequences, SNP mapping information, and BLAST results.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Sus scrofa domestica (9825), Gallus gallus (9031)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:8138161
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PubMed ID:10612229
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PubMed ID:11167524
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PubMed ID:12648097
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PubMed ID:12755823
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PubMed ID:17145712
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PubMed ID:14681463
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PubMed ID:10612229
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PubMed ID:11167524
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PubMed ID:10690355
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PubMed ID:10947985
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PubMed ID:12648097
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PubMed ID:12755823
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PubMed ID:12871218
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PubMed ID:12873213
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PubMed ID:15777643
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PubMed ID:16189668
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PubMed ID:16441290
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PubMed ID:16263171
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PubMed ID:16712934
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PubMed ID:17112699
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Language(s)Languages in which the contents of the database are displayed Japanese, English
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data ―
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing ―
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer Integbio Database Catalog
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2013-06-17
Last update date of this recordLast update date of this English record 2013-06-17
Record license Creative Commons CC0 license