Database Record
Inactive
ACLAME: A CLAssification of Mobile genetic Elements
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC00355 | ||||||||||||||||||||||||||||
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| Database nameName of the database | ACLAME | ||||||||||||||||||||||||||||
| Alternative nameAlternative name of the database | A CLAssification of Mobile genetic Elements | ||||||||||||||||||||||||||||
| URLURL of the database | http://aclame.ulb.ac.be/ | ||||||||||||||||||||||||||||
| Database maintenance siteSite maintaining the database | Universite Libre de Bruxelles | ||||||||||||||||||||||||||||
| Country/RegionCountry or region name where the database maintenance site is located | Belgium | ||||||||||||||||||||||||||||
| Database descriptionDatabase descirption | ACLAME Version 4 is a database of the mobile genetic elements (MGEs) as found in the genomes of all phages, plasmids and transposons known at present - 811 hosts in total. Information on 122,154 proteins, discovered to be present in 2,326 MGEs, is provided. The proteins were grouped in families as follows: The prophages contained 6,822 clusters, the plasmids 18,228 groups, the viruses and prophages 16,057 groups and the viruses 11,503 clusters. The database is in the process of developing a classification system of the functional modules of these MGEs at the protein level, gene level, and higher. Keyword and Blast search options are available. An option is also offered whereby host-specific groups of MGEs can be viewed. | ||||||||||||||||||||||||||||
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Eukaryota (2759), Bacteria (2), Viruses (10239) | ||||||||||||||||||||||||||||
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database |
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| Language(s)Languages in which the contents of the database are displayed | English | ||||||||||||||||||||||||||||
| Operational statusOperational status for the database | Inactive | ||||||||||||||||||||||||||||
| Link(s) to Downloadable dataLinks to downloadable data | http://aclame.ulb.ac.be/perl/Aclame/Tools/exporter.cgi | ||||||||||||||||||||||||||||
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | http://aclame.ulb.ac.be/perl/Aclame/Tools/exporter.cgi | ||||||||||||||||||||||||||||
| Link(s) to Terms of useLinks to terms of use of downloadable data | http://aclame.ulb.ac.be/terms_of_use.html | ||||||||||||||||||||||||||||
| Link(s) to "How to use" | ― | ||||||||||||||||||||||||||||
| Contact information of database | ― | ||||||||||||||||||||||||||||
| Link(s) to API / SPARQL endpoint | ― | ||||||||||||||||||||||||||||
| Link to LSDB ArchiveLink to LSDB Archive | ― | ||||||||||||||||||||||||||||
| Link to MEDALS Database listLink to MEDALS Database list | ― | ||||||||||||||||||||||||||||
| Link to TogoTVLink to TogoTV | ― | ||||||||||||||||||||||||||||
| Link to FAIRsharingLink to FAIRsharing | https://fairsharing.org/biodbcore-000549 | ||||||||||||||||||||||||||||
| Similar databasesDatabases that are similar to this database. | |||||||||||||||||||||||||||||
| Record maintainerRecord maintainer | Integbio Database Catalog | ||||||||||||||||||||||||||||
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2013-06-17 | ||||||||||||||||||||||||||||
| Last update date of this recordLast update date of this English record | 2013-06-17 | ||||||||||||||||||||||||||||
| Record license | Creative Commons CC0 license |