Database Record
16S RNA sequence set for metagenomic analysis
| IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. | NBDC02583 |
|---|---|
| Database nameName of the database | 16S RNA sequence set for metagenomic analysis |
| Alternative nameAlternative name of the database | ― |
| URLURL of the database | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/desc.html |
| Database maintenance siteSite maintaining the database | Graduate School of Integrated Sciences for Life, Hiroshima University (Link to J-Global) |
| Country/RegionCountry or region name where the database maintenance site is located | Japan |
| Database descriptionDatabase descirption | It is a set of 16S RNA sequences for metagenomic analysis using kraken2. Sequences with taxonomy ID, accession No. and definition are provided in fasta format. |
| Organism(s) coveredNCBI Taxonomy names and IDs covered by the database | Bacteria (2) |
| Tag - TargetTag to indicate targets for this database such as genome and protein |
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
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| Tag - Information typeTag to indicate information types for this database such as sequence and structure |
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
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| Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database | ― |
| Language(s)Languages in which the contents of the database are displayed | Japanese, English |
| Operational statusOperational status for the database | Active |
| Link(s) to Downloadable dataLinks to downloadable data | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/download.html |
| Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/data-1.html |
| Link(s) to Terms of useLinks to terms of use of downloadable data | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/lic.html |
| Link(s) to "How to use" | ― |
| Contact information of database | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/desc.html |
| Link(s) to API / SPARQL endpoint | ― |
| Link to LSDB ArchiveLink to LSDB Archive | https://dbarchive.biosciencedbc.jp/en/metagenomerefdb/desc.html |
| Link to MEDALS Database listLink to MEDALS Database list | ― |
| Link to TogoTVLink to TogoTV | ― |
| Link to FAIRsharingLink to FAIRsharing | ― |
| Similar databasesDatabases that are similar to this database. | |
| Record maintainerRecord maintainer | Integbio Database Catalog |
| Record sourceOrganization that originally created the record |
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| Date of creation of this recordDate of creation of this English record | 2021-09-27 |
| Last update date of this recordLast update date of this English record | 2021-09-27 |
| Record license | Creative Commons CC0 license |