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Genetic and Genomic Information System: GnpIS

IDNBDC common database IDs, which should be written in parentheses if there are multiple titles, such as Japanese and English. NBDC02030
Database nameName of the database Genetic and Genomic Information System
Alternative nameAlternative name of the database GnpIS
URLURL of the database https://urgi.versailles.inra.fr/gnpis
Database maintenance siteSite maintaining the database ELIXIR, Wellcome Genome Campus, URGI, transplant
Country/RegionCountry or region name where the database maintenance site is located France
Database descriptionDatabase descirption GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Institute for Agricultural Research. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
Organism(s) coveredNCBI Taxonomy names and IDs covered by the database Agaricus subrefescens (87252), Arabidopsis thaliana (3702), Arabis alpina (50452), Botrytis cinerea B0510 (332648), Botrytis cinerea T4 (999810), Leptosphaeria (5021), Malus x domestica (3750), Medicago truncatula (3880), Microbotryum violaceum (5272), Oryza (4527), Pisum sativum L. (3888), Viridiplantae (33090), Populus trichocarpa (3694), Sclerotinia sclerotiorum (5180), Solanum lycopersicum (ITAG 2.3) (4081), Triticum aestivum (4565), Tuber melanosporum (39416), Venturia inaequalis (5025), Vitis vinifera (29760), Zea mays (4577)
Tag - TargetTag to indicate targets for this database such as genome and protein
Genome/Gene
cDNA/EST
Genetic variation
Epigenetics
DNA
RNA
Protein
Carbohydrate
Lipid
Metabolite
Chemical compound
Drug
Cell/Organelle
Organism
Health/Disease
Tag - Information typeTag to indicate information types for this database such as sequence and structure
Phenotype
Bioresource
Method
Ontology/Terminology/Nomenclature
Environment
Sequence
3D structure
Chemical structure
Expression
Localization
Geographic Distribution
Interaction/Pathway
Taxonomy
Classification
Image/Movie
Bibliography/Documents
Portal
Repository
Reference(s) - PubMed ID/DOIPubMed IDs/DOI for papers related to the database
PubMed ID:23959375
DOI:-
Language(s)Languages in which the contents of the database are displayed English, French
Operational statusOperational status for the database Active
Link(s) to Downloadable dataLinks to downloadable data ―
Link(s) to MetaData of downloadable dataLinks to metadata of downloadable data ―
Link(s) to Terms of useLinks to terms of use of downloadable data ―
Link(s) to "How to use" ―
Contact information of database ―
Link(s) to API / SPARQL endpoint ―
Link to LSDB ArchiveLink to LSDB Archive ―
Link to MEDALS Database listLink to MEDALS Database list ―
Link to TogoTVLink to TogoTV ―
Link to FAIRsharingLink to FAIRsharing https://fairsharing.org/10.25504/FAIRsharing.dw22y3
Similar databasesDatabases that are similar to this database.
Record maintainerRecord maintainer See the corresponding part in the FAIRsharing record
Record sourceOrganization that originally created the record
Date of creation of this recordDate of creation of this English record 2019-03-28
Last update date of this recordLast update date of this English record 2024-07-28
Record license Creative Commons Attribution and Share-alike (CC-BY-SA) International 4.0 license